View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_32 (Length: 322)
Name: NF2498_low_32
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 4845264 - 4844979
Alignment:
| Q |
1 |
attcaattaaaacatggacctttgatggaacctcacaacgccaaacacctgtaaaaatcttgctcatatctcgattaatgactgttgaatattttgcatg |
100 |
Q |
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| T |
4845264 |
attcaattaaaacagggacctttgatggaacctcacaacactaaacacctgtaaaaatcttgctcatatctcgattaatgactgttgaatattttgcatg |
4845165 |
T |
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| Q |
101 |
aagcatgacttgaaagcttgacctggcggtatatatatatcaagaacatcatgttttcgtgcccacacgtgggaagctagtatatcttggcctatacata |
200 |
Q |
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| T |
4845164 |
aagcatgacttgaaagcatgacatagtggtatatatat--caagaacatcatgttttcgtgcccacacgtgggaagctagtatatcttggcctatacata |
4845067 |
T |
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| Q |
201 |
cccattaacaacaaaagtagatcaacaactaaatcatcctcccaagagaataaatctcgacgcaaacacagcctccaagaatgactat |
288 |
Q |
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| T |
4845066 |
cccattaacaacaaaagtagatcaacaactaaatcatcctccaaagagaataaatttcgacgtaaacacagcctccaagaatgactat |
4844979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 4799973 - 4799710
Alignment:
| Q |
9 |
aaaacatggacctttgatggaacctcacaacgccaaacacctgtaaaaatcttgctcatatctcgattaatgactgttgaatattttgcatgaagcatga |
108 |
Q |
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|||||| |||||||||| |||||||||||| ||| |||| |||||| |||||||| |||| |||| ||||||| ||||||| |||||||||||| | |
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| T |
4799973 |
aaaacacggacctttgacagaacctcacaacttcaatcaccactaaaaaccttgctcaaatctggattcatgactgctgaatatcttgcatgaagcacaa |
4799874 |
T |
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| Q |
109 |
cttgaaagcttgacctggcggtatatatatatcaagaacatcatgttttcgtgcccacacgtgggaagctagtatatcttggcctatacatacccattaa |
208 |
Q |
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| T |
4799873 |
cttgaaagctggacctggcag--tatatccggcaagaacatcaagtttccatgcccacttgtgtgaagctagtatgccttggctt----ataccaatcaa |
4799780 |
T |
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| Q |
209 |
caacaaaagtagatcaacaactaaatcatcctcccaagagaataaatctcgacgcaaacacagcctccaa |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| || |||| ||||| |||||||||| |
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| T |
4799779 |
caacaaaagtagatcaacaactaaatcatcctcccaagcgaatatatttcgaggcaaatgcagcctccaa |
4799710 |
T |
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