View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_35 (Length: 312)
Name: NF2498_low_35
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 5898112 - 5897838
Alignment:
| Q |
17 |
acttttactatctacaaaaaatctatgaaatttcgttgcttggttattgttcaatccaattcaaacgtgaagaagaagagaactatacgtgttcagttgc |
116 |
Q |
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| T |
5898112 |
actttaactatctacaaaaaatctatgaaatttcgttgcttggttattggtcaatccaattcaaacgtgaagaagaagagaactatacgtgttcagttgc |
5898013 |
T |
|
| Q |
117 |
tgatcaagaatcaaggaaaagaactaaattgtacttatccatataacgtggctgcctcatatatagaattaatgaagcatgaattccatgccaatgagag |
216 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5898012 |
tgatcaagaatcaaggaaaagaactaaattgtactcatccatataacgtggctgcctcatatatagaattaatgaagcatgaattccatgccaatgagag |
5897913 |
T |
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| Q |
217 |
attttcaggnnnnnnnggcaccattaccaagttagattgtgaattttgttccttttcaacaagtgcttatatatgc |
292 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5897912 |
attttcagg-aaaaaaggcaccattaccaagttagattgtgaaatttgttccttttcaacaagtgcttatatatgc |
5897838 |
T |
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