View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_36 (Length: 311)
Name: NF2498_low_36
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 31 - 301
Target Start/End: Original strand, 2213173 - 2213441
Alignment:
| Q |
31 |
ctttccttctccaaggctccaactttgtccacatcttcccgggtctgatttgtactcttctaacctccttttcatttacctatcctattaacccattcca |
130 |
Q |
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| T |
2213173 |
ctttccttctccaaggctccaactttgtccacaccttcccggatccgatttgtactcttctaacctccttttcatttacctatcctattaacccattcca |
2213272 |
T |
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| Q |
131 |
acacaatacatctgtttttcaactgtccttcccttacctctcctagaatacacttttaatgccctctctccttaatacaatacattcactctgtttgttg |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2213273 |
acacaatacatctgtttttcaactgtccttcccttacctctcctagaatacacttttaatgccctctctccttaatacaatacattcactc----tgttg |
2213368 |
T |
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| Q |
231 |
cagattatggtaatatttg--nnnnnnnnnnnnggttttatacccgttcttatttatttctttgtctcctatg |
301 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2213369 |
cagattatggtaatatttgttttttttttttttggttttatacccgttcttatttatttctttgtctcctatg |
2213441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 2200511 - 2200784
Alignment:
| Q |
19 |
actcaatggaatctttccttctccaaggctccaactttgtccacatcttcccgggtctgatttgtactcttctaacctccttttcatttacctatcctat |
118 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2200511 |
actcaatgtaatttttccttctccaaggctccaactttgtctacaccttccaggatctgatttgtactcttctaacctccttttcatttacctatcctat |
2200610 |
T |
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| Q |
119 |
taacccattccaacacaatacatctgtttttcaactgtccttcccttacctctcctagaatacacttttaatgccctctctccttaatacaatacattca |
218 |
Q |
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|||| |||| |||| |||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
2200611 |
taactggttcctacac--tacatctgttttccaactgtccttctcttacctctcctagaatatacttttaatgccctctctccttaatacaatacactca |
2200708 |
T |
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| Q |
219 |
ctctgtttgttgcagattatggtaatatttgnnnnnnnnnnnnggttttatacccgttcttatttatttctttgtct |
295 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
2200709 |
ctctgtttgttgcggattatggtaatatttg-tttttttttttggttttatacccgttcttatttatttctatgtct |
2200784 |
T |
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