View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_37 (Length: 311)
Name: NF2498_low_37
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 34534353 - 34534055
Alignment:
| Q |
1 |
gctaaaacgacactcattttaaaatggaatgagtattgatgaagattaaaattttactgaaccttaattttaattatgtaatcaaatattgaacttaaat |
100 |
Q |
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|||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34534353 |
gctaaaacgatactcattttaaaacggaatgagtattcatgaagattaaaattttacggaaccttaattttaattatgtaatcaaatattgaacttaaat |
34534254 |
T |
|
| Q |
101 |
ataaccnnnnnnn-atcttaatcgaatgccaattgatatttttaatgcctgaatgcaaggatattttcttgaagaaggcctgaatgcaaggacattaaca |
199 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34534253 |
ataaccttttttttatcttaatcgaatgccaattgatatttttaatgcctgaatgcaaggatattttcttgaagaaggcctgaatgcaaggacattaaca |
34534154 |
T |
|
| Q |
200 |
ataggg--aagttgagtcccgatatgttcaactacagcttcttccatattattttttgaacaagttgtctccttagtttataacgttgatggttcaagt |
296 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34534153 |
atagggaaaagttgagtcccgatatgttctactacagcttcttccatattattttttgaacaagttgtctccttagtttataacgttgatggttcaagt |
34534055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 29713351 - 29713304
Alignment:
| Q |
2 |
ctaaaacgacactcattttaaaatggaatgagtattgatgaagattaa |
49 |
Q |
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||||| ||||||||||||||||| |||| ||||||||||||| ||||| |
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| T |
29713351 |
ctaaagcgacactcattttaaaacggaaggagtattgatgaatattaa |
29713304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 34576748 - 34576782
Alignment:
| Q |
1 |
gctaaaacgacactcattttaaaatggaatgagta |
35 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
34576748 |
gctaaaacgacacttattttaaaatggaatgagta |
34576782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 31583597 - 31583630
Alignment:
| Q |
2 |
ctaaaacgacactcattttaaaatggaatgagta |
35 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
31583597 |
ctaaaacgacactcattttaaaacggaatgagta |
31583630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 44453340 - 44453376
Alignment:
| Q |
1 |
gctaaaacgacactcattttaaaatggaatgagtatt |
37 |
Q |
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|||||||||||||||||||||||| |||| ||||||| |
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| T |
44453340 |
gctaaaacgacactcattttaaaacggaaggagtatt |
44453376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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