View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2498_low_38 (Length: 304)
Name: NF2498_low_38
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 9037670 - 9037395
Alignment:
| Q |
14 |
atatcatttaaatactaccgcttaaagttgtgttccatcgttggaaaaaacttacatagaagaacccatattcctcacatgcttggccaagcaattcaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9037670 |
atatcatttaaatactaccgcttaaagttgtgttccatcgttggaaaaaacttacatagaagaacccatattcctcacatgcttggccaagcaattcaag |
9037571 |
T |
|
| Q |
114 |
ggtaatagatcgtttatcagtgtcatcagataataatagagaataatcaattgtgggtatttcttcatttgaagctagataattatcactgtgatggtgt |
213 |
Q |
| |
|
|| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9037570 |
ggcaatagatctttgatcagtgtcatcagataataatagagaataatcaattgtgggtatttcttcatttgaagcgagataattatcactgtgatggtgt |
9037471 |
T |
|
| Q |
214 |
tctcccaatgcctgatgagatgatgcattaaaataaactggggtagctttaaattccggttggaaagggtgtaatt |
289 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9037470 |
tctaccaatgcctggtgagatgatgcattaaaataaactggggtagctttaaattccggttggaaagggtgtaatt |
9037395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 59 - 289
Target Start/End: Complemental strand, 9043115 - 9042885
Alignment:
| Q |
59 |
aaaaacttacatagaagaacccatattcctcacatgcttggccaagcaattcaagggtaatagatcgtttatcagtgtcatcagataataatagagaata |
158 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| || | ||| | ||||||||||||||||| || |||||||||||||||||||||||| ||||| |
|
|
| T |
9043115 |
aaaaacttacatagaagaacccatattcttcacatgcatgactaaggagttcaagggtaatagatctttgatcagtgtcatcagataataatagtgaata |
9043016 |
T |
|
| Q |
159 |
atcaattgtgggtatttcttcatttgaagctagataattatcactgtgatggtgttctcccaatgcctgatgagatgatgcattaaaataaactggggta |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| || |||||||||| |||||||| ||||||||| ||||||||||||| |||| | |
|
|
| T |
9043015 |
atcaattgtgggtatttcttcatttgaagctatataattatcactatggtggtgttctctcaatgcctcatgagatgaaacattaaaataaaccggggca |
9042916 |
T |
|
| Q |
259 |
gctttaaattccggttggaaagggtgtaatt |
289 |
Q |
| |
|
||||||||||||||| |||||| |||||||| |
|
|
| T |
9042915 |
gctttaaattccggtgggaaagagtgtaatt |
9042885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 66 - 195
Target Start/End: Complemental strand, 9029228 - 9029099
Alignment:
| Q |
66 |
tacatagaagaacccatattcctcacatgcttggccaagcaattcaagggtaatagatcgtttatcagtgtcatcagataataatagagaataatcaatt |
165 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| || || |||| ||||||||||||||||||||||||||||| |
|
|
| T |
9029228 |
tacatagaagaaaccatattcctcacatgcttggccaagcaattcaagggcaatagatctttgattagtgccatcagataataatagagaataatcaatt |
9029129 |
T |
|
| Q |
166 |
gtgggtatttcttcatttgaagctagataa |
195 |
Q |
| |
|
|| ||||||||||||| |||||||||||| |
|
|
| T |
9029128 |
gttggtatttcttcatcagaagctagataa |
9029099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University