View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_42 (Length: 283)
Name: NF2498_low_42
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 29005917 - 29005689
Alignment:
| Q |
1 |
acatgggcacatggtgattttcttagtagcagagacaaaagtagcaagattaggttaaaatagaaatggtaggccaatattcaaaatagaagtccagaac |
100 |
Q |
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| T |
29005917 |
acataggcacatggtgattttcttagtagcagagacaaaagtagcaatattaggttaaaatagaaatggtaggccaatattcaaaatagaagtccagaac |
29005818 |
T |
|
| Q |
101 |
taaacttttcaaattgaaattaaaggcattttgcaggcaagagatggaggagggtccatgtatgtggcttcttataaattaaaaactttaacaagctggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
29005817 |
taaacttttcaaattgaaattaaaggcattttgcaggcaagatatggaggagggtccatgtatgtggcttcttataaatgaaaatctttaacaagctggt |
29005718 |
T |
|
| Q |
201 |
tctacaaaagttccagcccaggcaacata |
229 |
Q |
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|| |||||||||||||||||| ||||||| |
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| T |
29005717 |
tccacaaaagttccagcccagccaacata |
29005689 |
T |
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