View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2498_low_43 (Length: 273)
Name: NF2498_low_43
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_43 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 5897720 - 5897481
Alignment:
| Q |
19 |
gtttcaactataaacataattgtgttcttccactagttagttaactcgatgtatatccatttatatatcgagtgtgtaagtttctcgtgacttcactagc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5897720 |
gtttcaactataaacataattgtgttcttccactagttagttaactcgatgtatatccatttatatatcgagtgtataagtttctcgtgacttcactagc |
5897621 |
T |
|
| Q |
119 |
ccttagagcaaaggtttttcgtgactttacttcaagttggttcccatttgtttgcgtgatcttaattaattgatttgtttgaacatttttattactgctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5897620 |
ccttagagcaaaggtttttcgtgactttacttcaagttggttcccatttgtttgcgtgatcttaattaattgatttgtttgaacatttttattactgctt |
5897521 |
T |
|
| Q |
219 |
acgtttgttttattgtttctatatcttgtcgatcttttat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5897520 |
acgtttgttttattgtttctatatcttgtcgatcttttat |
5897481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University