View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_44 (Length: 272)
Name: NF2498_low_44
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 157 - 265
Target Start/End: Original strand, 36061186 - 36061294
Alignment:
| Q |
157 |
attgcaaaagttaatgattagttatcagattaannnnnnncttatttgtttgagattgaattaagactctaacttcttatccgttagatatatgttcact |
256 |
Q |
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| T |
36061186 |
attgcaaaagttaatgattagttatcagattaatttttttcttatttgtttgagattgaattaagactctaatttcttatccgttagatatatattcact |
36061285 |
T |
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| Q |
257 |
cttattttt |
265 |
Q |
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| T |
36061286 |
cttattttt |
36061294 |
T |
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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 36061035 - 36061117
Alignment:
| Q |
7 |
gtgagaagaataatgggacgtgcgtcaccgatgccgtaaggtaagggcgtcaaaattttga-aatgcattcctaacaataatg |
88 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
36061035 |
gtgaaaagaataatgggacgtgcgtcaccgatgccgtaagataagggcgtcaaaattttgagaatgcatacctaacaataatg |
36061117 |
T |
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