View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2498_low_45 (Length: 270)
Name: NF2498_low_45
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_45 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 49562193 - 49562462
Alignment:
| Q |
1 |
atatgcatttctaatatttttcgattctattttggtttattagaattgccaacatatgggaaaagacatttgatatgtttactttcttgctccccaatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49562193 |
atatgcatttctaatatttttcgattctattttggtttattagaattgccaacatatgggaaaagacatttgatatgtttactttcttgctccccaatcc |
49562292 |
T |
|
| Q |
101 |
cacctcatttatgttagatattcaagcattgttctaatcccacctcatttatatagttacaccaaaatatgcactcacaacttatcaaagcagcagtcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49562293 |
cacctcatttatgttagatattcaagcattgttctaatcccacctcatttatatagttacaccaaaatatgcactcacaacttatcaaagcagcagtcag |
49562392 |
T |
|
| Q |
201 |
cagaagctagcatcctccccccgatatagctttaatagacaatatgcttcctcctcaaaacgattcacat |
270 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49562393 |
cagatgctagcatcctccccccgatatagctctaatagacaatatgcttcctcctcaaaacgattcacat |
49562462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 41486843 - 41486905
Alignment:
| Q |
23 |
gattctattttggtttattagaattgccaacatatgggaaaaga---catttgatatgtttac |
82 |
Q |
| |
|
||||||| ||||||||| ||||||| |||||||||| || |||| |||||||||||||||| |
|
|
| T |
41486843 |
gattctactttggtttagtagaattaccaacatatgagataagagtacatttgatatgtttac |
41486905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University