View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_49 (Length: 262)
Name: NF2498_low_49
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 21119423 - 21119186
Alignment:
| Q |
18 |
attcacatatgcggagttttagaggtttaacagcatctaacttgcaaccatgaaatatatcaacaaaacttagcagattgtccaatgtagtttctgtcat |
117 |
Q |
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| T |
21119423 |
attcacatatgcggagttttagaggtttaacggaatctaacttgcaaccatgaaatatatcaacaaaacttagcagattgtccaatgtagtttctgtcat |
21119324 |
T |
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| Q |
118 |
gtttggaagcacaacttcattttattctacttgttgagtagcttgtgacatttaaagcttgcttggttgcggaagcattctaaccttagtaacagggaaa |
217 |
Q |
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| T |
21119323 |
gtttggaagcacaacttcattttattccacttgttgagtagcttgtgacatttaaagcttgcttggttgcggaagcattctaaccttagtaacagggaaa |
21119224 |
T |
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| Q |
218 |
agacttttcgacaaagttgagatgaacgagttggccta |
255 |
Q |
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| T |
21119223 |
agacttttcaacaaagttgagatgaacgagttgaccta |
21119186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 21126871 - 21126782
Alignment:
| Q |
18 |
attcacatatgcggagttttagaggtttaacagcatctaacttgcaaccatgaaatatatcaacaaaacttagcagattgtccaatgtag |
107 |
Q |
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| T |
21126871 |
attcacatatgcggagttttagaggtttaactgcatctaacttgcaatcatgaaatatatcaagaaaattcagcagatcatccaatgtag |
21126782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 21126630 - 21126580
Alignment:
| Q |
205 |
agtaacagggaaaagacttttcgacaaagttgagatgaacgagttggccta |
255 |
Q |
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| T |
21126630 |
agtaacagggaacagatttttcaacaaagttgagatgaccgagttggccta |
21126580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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