View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2498_low_50 (Length: 260)

Name: NF2498_low_50
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2498_low_50
NF2498_low_50
[»] chr5 (10 HSPs)
chr5 (14-244)||(1849620-1849850)
chr5 (14-244)||(1163916-1164146)
chr5 (14-217)||(3299149-3299352)
chr5 (14-217)||(3392042-3392245)
chr5 (19-213)||(38987356-38987550)
chr5 (19-213)||(40417946-40418140)
chr5 (65-213)||(39726115-39726263)
chr5 (65-213)||(39879517-39879665)
chr5 (65-211)||(39168603-39168749)
chr5 (98-212)||(39399637-39399751)
[»] chr4 (1 HSPs)
chr4 (14-211)||(25912530-25912727)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 1849620 - 1849850
Alignment:
Q  14 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatcca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1849620 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatcca 1849719  T
Q  114 tttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctctaggcatcagttagtggaatatgttgttctcg 213  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  1849720 tttaccttgacccgctgtttcttaaaggctgatcgttactgggatgcacccttcacgccttcattctctaggcatcagttagtggaatatgttgttctcg 1849819  T
Q  214 gtatcgagaaattagatgaggaggaggagga 244  Q
    |||||||||||||||||||||||||||||||    
T  1849820 gtatcgagaaattagatgaggaggaggagga 1849850  T

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Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 1164146 - 1163916
Alignment:
Q  14 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatcca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1164146 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatcca 1164047  T
Q  114 tttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctctaggcatcagttagtggaatatgttgttctcg 213  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||| ||||||||    
T  1164046 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcg 1163947  T
Q  214 gtatcgagaaattagatgaggaggaggagga 244  Q
    |||| ||||||||||||||||||||||||||    
T  1163946 gtattgagaaattagatgaggaggaggagga 1163916  T

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Target: chr5; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 3299149 - 3299352
Alignment:
Q  14 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatcca 113  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||    
T  3299149 gattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaatatttactttgcttgatcca 3299248  T
Q  114 tttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctctaggcatcagttagtggaatatgttgttctcg 213  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||    
T  3299249 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgttgttctcg 3299348  T
Q  214 gtat 217  Q
    ||||    
T  3299349 gtat 3299352  T

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Target: chr5; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 3392042 - 3392245
Alignment:
Q  14 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatcca 113  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||    
T  3392042 gattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaatatttactttgcttgatcca 3392141  T
Q  114 tttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctctaggcatcagttagtggaatatgttgttctcg 213  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||    
T  3392142 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgttgttctcg 3392241  T
Q  214 gtat 217  Q
    ||||    
T  3392242 gtat 3392245  T

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Target: chr5; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 38987356 - 38987550
Alignment:
Q  19 ttctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatccatttac 118  Q
    ||||||||  |||| ||| ||||||||| ||||||||||||||||||||||| || || ||||||||||||| |||||||||||||||||||||||||||    
T  38987356 ttctgcctcctaatgttgttgcttctttgggtccaaatattggtcctattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttac 38987455  T
Q  119 cttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctctaggcatcagttagtggaatatgttgttctcg 213  Q
    ||||||||||||||||||| | ||| |||  |||||| | ||||| |||   | |||||||  ||||  ||||||||| ||||||||||||||||    
T  38987456 cttgacccactgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaataggactcagttagtcgaatatgttgttctcg 38987550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 40417946 - 40418140
Alignment:
Q  19 ttctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatccatttac 118  Q
    ||||||||  |||| ||| ||||||||| |||  |||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||    
T  40417946 ttctgcctcctaatgttgttgcttctttcggtgaaaatattggtcctattgtcatttgcactagggttgccaaaacatttactttgcttgatccatttac 40418045  T
Q  119 cttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctctaggcatcagttagtggaatatgttgttctcg 213  Q
    ||||||||||||||||||| | ||| |||  |||||| | ||||| |||   | |||||||  ||||  ||||||||| ||||||||||||||||    
T  40418046 cttgacccactgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaataggactcagttagtcgaatatgttgttctcg 40418140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 213
Target Start/End: Original strand, 39726115 - 39726263
Alignment:
Q  65 tattgttatttgtactagggttgccagaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctgatcgttactgggatgcaccc 164  Q
    |||||| || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| |||  |||||| | |||||     
T  39726115 tattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcacca 39726214  T
Q  165 ttcctgccttcattctctaggcatcagttagtggaatatgttgttctcg 213  Q
    |||   | |||||||  ||||  ||||||||| ||||||||||||||||    
T  39726215 ttcacacattcattcaataggactcagttagtcgaatatgttgttctcg 39726263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 213
Target Start/End: Original strand, 39879517 - 39879665
Alignment:
Q  65 tattgttatttgtactagggttgccagaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctgatcgttactgggatgcaccc 164  Q
    |||||| || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| |||  |||||| | |||||     
T  39879517 tattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcacca 39879616  T
Q  165 ttcctgccttcattctctaggcatcagttagtggaatatgttgttctcg 213  Q
    |||   | |||||||  ||||  ||||||||| ||||||||||||||||    
T  39879617 ttcacacattcattcaataggactcagttagtcgaatatgttgttctcg 39879665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 39168603 - 39168749
Alignment:
Q  65 tattgttatttgtactagggttgccagaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctgatcgttactgggatgcaccc 164  Q
    ||||||||| || ||||||||||||| || | ||||||| ||||||||||||||||||||    | || |||||||||||||   |||||| ||||||||    
T  39168603 tattgttatatgcactagggttgccaaaaaaattactttacttgatccatttaccttgactgctttttccttaaaggctgatgagtactggaatgcaccc 39168702  T
Q  165 ttcctgccttcattctctaggcatcagttagtggaatatgttgttct 211  Q
    |||  || ||||||| |||||  |||||||||| |||||||||||||    
T  39168703 ttcacgcattcattcactaggactcagttagtgaaatatgttgttct 39168749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 39399637 - 39399751
Alignment:
Q  98 tactttgcttgatccatttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctctaggcatcagttagtg 197  Q
    ||||||||||||||||||||||||||||   | || ||||||||||||||  |||||| ||||||| |||  || |||||||  ||||  |||||||||     
T  39399637 tactttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgcacctttcacgcattcattcaataggactcagttagtc 39399736  T
Q  198 gaatatgttgttctc 212  Q
     ||||| ||||||||    
T  39399737 aaatattttgttctc 39399751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 25912727 - 25912530
Alignment:
Q  14 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatcca 113  Q
    |||| ||||||||  |||| |||||||||||||  ||  |||||||||||||||||| ||||| ||||||||||||| |||||||||||| |||||||||    
T  25912727 gatttttctgcctcctaatgttgctgcttctttcagtgtaaatattggtcctattgtcatttgcactagggttgccaaaacatttactttacttgatcca 25912628  T
Q  114 tttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctctaggcatcagttagtggaatatgttgttct 211  Q
    ||||||||||| || |||||||| ||||||||||  |||||| |||||||||||  ||||| |||| |||||| ||||||||| |||||| |||||||    
T  25912627 tttaccttgactcattgtttcttgaaggctgatcagtactggaatgcacccttcacgccttaattcactaggcctcagttagttgaatatattgttct 25912530  T

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