View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_52 (Length: 252)
Name: NF2498_low_52
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 12162680 - 12162455
Alignment:
| Q |
16 |
caatactgtgtcctatattataacaagaggaaagctttgagaagtactcataaaattttaattttgttaattaagttaagctgctcattgtgaccctttg |
115 |
Q |
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| T |
12162680 |
caatactgtgtcctatattataacaagaggaaagctttgagaagtactcataaaattttaattttgttaattaagttaagctgctcattgtgaccctttg |
12162581 |
T |
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| Q |
116 |
tgaaaatttcacatttgctaacaaatcataaatacctttgtaaaataacaattaacatttgcaaataccttttgggccttgaggtattctttaacct-aa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
12162580 |
tgaaaatttcacatttgctaacaaatcataaatacctttgtaaaataacaattaacatttgcaaataccttttgggccttgaggtattctttaacctaaa |
12162481 |
T |
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| Q |
215 |
attagcctcttagaattcatcaccta |
240 |
Q |
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|||||||||||||||||||||||||| |
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| T |
12162480 |
attagcctcttagaattcatcaccta |
12162455 |
T |
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