View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_53 (Length: 252)
Name: NF2498_low_53
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_53 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 252
Target Start/End: Complemental strand, 2425340 - 2425095
Alignment:
| Q |
4 |
catgtcgaagaatatatattgcttataacaggtttacattaaannnnnnnnnattcttttacttctttgaagattattcctcaatcagtttgttcccggt |
103 |
Q |
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| T |
2425340 |
catgttgaataaaatatattgcttataacaggtttacattaatttttttt---ttcttttacttctttgaagattattcctcaatcagtttgttcccggt |
2425244 |
T |
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| Q |
104 |
atggtttaacgatcggtgcaacggtggctccgattgttcgtgttcttgtgtggatatgtttacctgttgcttatccaattagcaaggtgcatgatacaaa |
203 |
Q |
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| T |
2425243 |
atggtttaacaatcggtgcaacggtggctccgattgttcgtgttcttgtgtggatatgtttacctgttgcttatccaattagcaaggtgcatgatacaaa |
2425144 |
T |
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| Q |
204 |
tacattcaacatgatatttatttgaataaaacttgaccaatttgatttt |
252 |
Q |
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| T |
2425143 |
tacattcaacatgatatttatttgaacaaaacttgaccaatttgatttt |
2425095 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 192
Target Start/End: Original strand, 36723418 - 36723539
Alignment:
| Q |
71 |
tgaagattattcctcaatcagtttgttcccggtatggtttaacgatcggtgcaacggtggctccgattgttcgtgttcttgtgtggatatgtttacctgt |
170 |
Q |
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| T |
36723418 |
tgaagattataccccaatcagtttgttctcgatatggtttggccattggtgcatcagtcactccttttgtccgcgtgcttgtatggatatgttatccagt |
36723517 |
T |
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| Q |
171 |
tgcttatccaattagcaaggtg |
192 |
Q |
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| T |
36723518 |
tgcttttccaattagcaaggtg |
36723539 |
T |
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