View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2498_low_59 (Length: 245)

Name: NF2498_low_59
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2498_low_59
NF2498_low_59
[»] scaffold0028 (1 HSPs)
scaffold0028 (18-227)||(126624-126833)
[»] chr2 (7 HSPs)
chr2 (18-229)||(10939049-10939260)
chr2 (18-229)||(10944911-10945122)
chr2 (18-240)||(73390-73611)
chr2 (23-86)||(26969973-26970036)
chr2 (24-69)||(18736869-18736914)
chr2 (27-107)||(14632353-14632433)
chr2 (27-69)||(19433005-19433047)
[»] chr7 (6 HSPs)
chr7 (18-240)||(32353410-32353631)
chr7 (18-229)||(31207645-31207856)
chr7 (30-229)||(13818016-13818216)
chr7 (18-115)||(39427231-39427328)
chr7 (23-170)||(32354256-32354400)
chr7 (27-77)||(2433928-2433978)
[»] chr4 (8 HSPs)
chr4 (18-240)||(43290898-43291119)
chr4 (18-231)||(17894014-17894227)
chr4 (18-245)||(6668858-6669091)
chr4 (23-231)||(8990036-8990242)
chr4 (22-244)||(6805625-6805846)
chr4 (27-77)||(6685190-6685240)
chr4 (27-77)||(572677-572727)
chr4 (27-77)||(6661364-6661414)
[»] chr3 (7 HSPs)
chr3 (18-240)||(14656936-14657157)
chr3 (18-244)||(42254611-42254836)
chr3 (18-244)||(19931171-19931397)
chr3 (23-86)||(53727792-53727855)
chr3 (23-107)||(32895123-32895207)
chr3 (24-81)||(11635231-11635288)
chr3 (24-69)||(16363991-16364036)
[»] chr8 (8 HSPs)
chr8 (18-227)||(38641718-38641927)
chr8 (22-244)||(43656762-43656981)
chr8 (24-69)||(31182861-31182906)
chr8 (19-77)||(9032484-9032543)
chr8 (27-69)||(38677691-38677733)
chr8 (27-77)||(21256799-21256849)
chr8 (27-69)||(44315963-44316005)
chr8 (27-70)||(29278150-29278193)
[»] chr5 (4 HSPs)
chr5 (18-244)||(16086247-16086473)
chr5 (25-149)||(31307633-31307757)
chr5 (23-107)||(26052353-26052437)
chr5 (27-77)||(25636103-25636153)
[»] chr1 (6 HSPs)
chr1 (18-231)||(1967704-1967917)
chr1 (29-229)||(24171977-24172178)
chr1 (25-229)||(49388542-49388746)
chr1 (18-231)||(38826451-38826665)
chr1 (22-72)||(47325006-47325056)
chr1 (27-69)||(49874118-49874160)
[»] chr6 (7 HSPs)
chr6 (18-229)||(24042578-24042789)
chr6 (18-244)||(6950749-6950975)
chr6 (18-229)||(19975064-19975280)
chr6 (22-107)||(27077256-27077341)
chr6 (24-69)||(15516065-15516110)
chr6 (25-69)||(34234560-34234604)
chr6 (27-69)||(34096887-34096929)
[»] scaffold0012 (1 HSPs)
scaffold0012 (23-107)||(201467-201551)
[»] scaffold0086 (1 HSPs)
scaffold0086 (27-69)||(38365-38407)


Alignment Details
Target: scaffold0028 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 126833 - 126624
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttct 117  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  126833 tttacccatttaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggtatagtctcgtttccctaaatttct 126734  T
Q  118 tcccaaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataa 217  Q
    ||||||||||||||||||||| ||||||| |||||| | |||||||| ||| | ||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  126733 tcccaaggggttttatatacggatccgctaaattcacatatattgactaaggcttctctaagtcaattaacctcatatttcatcaagtctataaaaataa 126634  T
Q  218 gctcggatta 227  Q
     |||||||||    
T  126633 actcggatta 126624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 10939049 - 10939260
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttct 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||    
T  10939049 tttacccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttcgagtggcagagtctcattttcctaaatttct 10939148  T
Q  118 tcccaaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataa 217  Q
    ||||||||||||||||||||| ||||| | |||||| |||||||||| ||||| ||||||| ||||||||||||| ||||||| |||| ||| |||||||    
T  10939149 tcccaaggggttttatatacggatccgttaaattcacaaatattgactaagacgtctctaagtcaattaacctcatatttcatcaagtttatgaaaataa 10939248  T
Q  218 gctcggattaca 229  Q
     |||||||||||    
T  10939249 actcggattaca 10939260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 10944911 - 10945122
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttct 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||    
T  10944911 tttacccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttcgagtggcagagtctcattttcctaaatttct 10945010  T
Q  118 tcccaaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataa 217  Q
    ||||||||||||||||||||| ||||| | |||||| |||||||||| ||||| ||||||| ||||||||||||| ||||||| |||| ||| |||||||    
T  10945011 tcccaaggggttttatatacggatccgttaaattcacaaatattgactaagacgtctctaagtcaattaacctcatatttcatcaagtttatgaaaataa 10945110  T
Q  218 gctcggattaca 229  Q
     |||||||||||    
T  10945111 actcggattaca 10945122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 73390 - 73611
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttct 117  Q
    |||| ||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  73390 tttacccattgaacattcttcatgggatctccaatcacaaaggttaggttctcattacttgtcgttttctagtggcaaagtatcatttccctaaatttct 73489  T
Q  118 tcccaaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataa 217  Q
    | ||||||||||||||| ||||||||||| |||||| | |||||||| ||||| ||||||| |||||| |||||  ||||||| |||||||||| |||||    
T  73490 ttccaaggggttttatacacgaatccgctaaattcacagatattgactaagacgtctctaagtcaatt-acctcttatttcatcaagtctataataataa 73588  T
Q  218 gctcggattacacattagattta 240  Q
     || |||||||||| || |||||    
T  73589 acttggattacacactaaattta 73611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 26969973 - 26970036
Alignment:
Q  23 ccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttc 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26969973 ccattgaaccttcttcatgggatctccaatcacaaaggttgggttaccattacttgtcgttttc 26970036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 18736869 - 18736914
Alignment:
Q  24 cattgaaccttcttcatgggatctccaatcacaaaggttgggttcc 69  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  18736869 cattgaaccttcttcatgggatctccaatcacaaaggttgagttcc 18736914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 14632353 - 14632433
Alignment:
Q  27 tgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttcc 107  Q
    ||||||||| |||||||||||||||||| ||| |||||||||| || ||||||||||||   |||| ||||| ||||||||    
T  14632353 tgaaccttcctcatgggatctccaatcataaatgttgggttccaatcacttgtcgtttttatgtgggatagtttcatttcc 14632433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 19433047 - 19433005
Alignment:
Q  27 tgaaccttcttcatgggatctccaatcacaaaggttgggttcc 69  Q
    |||||||| ||||||||||||||||||||||| ||||||||||    
T  19433047 tgaaccttattcatgggatctccaatcacaaatgttgggttcc 19433005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 32353410 - 32353631
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttct 117  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32353410 tttacccattgaaccttcttcatgggatctccaatcacataggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttct 32353509  T
Q  118 tcccaaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataa 217  Q
    ||||| ||||||||||||| | |||||||||||||| |||||||||| ||||| ||||||| |||||| |||||  ||||||| |||||||||| |||||    
T  32353510 tcccagggggttttatatatggatccgcttaattcacaaatattgactaagacgtctctaagtcaatt-acctcttatttcatcaagtctataataataa 32353608  T
Q  218 gctcggattacacattagattta 240  Q
     || |||||||||| || |||||    
T  32353609 acttggattacacactaaattta 32353631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 31207645 - 31207856
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttct 117  Q
    |||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| ||||    
T  31207645 tttacccattgaaccttcttcatgggatctccaatcaataaggttgggttcccattacttgccgttttctagtggcatggtctcatttccttaaaattct 31207744  T
Q  118 tcccaaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataa 217  Q
    |||||||||||||||| || | |||||||||||||| |||||||||| ||||| ||||||| ||||||||||||  ||||||| ||||||||||| ||||    
T  31207745 tcccaaggggttttatgtatggatccgcttaattcacaaatattgactaagacgtctctaagtcaattaacctcgtatttcatcaagtctataaagataa 31207844  T
Q  218 gctcggattaca 229  Q
     |||||||||||    
T  31207845 actcggattaca 31207856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 30 - 229
Target Start/End: Complemental strand, 13818216 - 13818016
Alignment:
Q  30 accttcttcatgggatctccaatcacaaaggttgggtt-cccattacttgtcgttttctagtggcatagtctcatttccctaaatttcttcccaaggggt 128  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||| |||||||||| ||||||||||||||||||||||    
T  13818216 accttcttcatgggatctccaatcacaaaggttgggtttcccattgcttgtcgttttcgagtggcagagtctcattttcctaaatttcttcccaaggggt 13818117  T
Q  129 tttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataagctcggattac 228  Q
    ||| || ||| ||||||| |||||| |||||||||| ||||| ||||||| ||||||||||||| ||||||| |||| ||| ||||||| |||| |||||    
T  13818116 tttctacacggatccgctaaattcacaaatattgactaagacgtctctaagtcaattaacctcatatttcatcaagtttatgaaaataaactcgaattac 13818017  T
Q  229 a 229  Q
    |    
T  13818016 a 13818016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 39427231 - 39427328
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaattt 115  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||   ||||||||| |||||||||    
T  39427231 tttacccattgaaccttcttcataggatctccaatcacaaaggttgggtttccattacttgtcgttttcgagtggctatgtctcattttcctaaattt 39427328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 32354400 - 32354256
Alignment:
Q  23 ccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttcttccca 122  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |   |||||||||     
T  32354400 ccattgaacctttttcatgggatctccaatcataaaggttgggttcccatcacttgtcgttttcgagtggcatagt-tcatttccttcgttttcttccc- 32354303  T
Q  123 aggggttttatatacgaatccgcttaattcataaatattgaccaagac 170  Q
     ||| |||| | ||||||| || | |||||| |||||||||| |||||    
T  32354302 -gggtttttgtctacgaattcgttaaattcacaaatattgactaagac 32354256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 2433978 - 2433928
Alignment:
Q  27 tgaaccttcttcatgggatctccaatcacaaaggttgggttcccattactt 77  Q
    |||||||| |||||||||||||||||||||||| |||||||||||| ||||    
T  2433978 tgaaccttattcatgggatctccaatcacaaagattgggttcccatcactt 2433928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 43291119 - 43290898
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttct 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43291119 tttacccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcgtttccctaaatttct 43291020  T
Q  118 tcccaaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataa 217  Q
    || || ||||||||||||||| |||| ||||||||| |||||||||| ||||||||||||| |||||| |||||  ||||||| |||||||||| |||||    
T  43291019 tctcatggggttttatatacggatccacttaattcacaaatattgactaagacatctctaagtcaatt-acctcttatttcatcaagtctataataataa 43290921  T
Q  218 gctcggattacacattagattta 240  Q
     || |||||||||| || |||||    
T  43290920 acttggattacacactaaattta 43290898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 17894227 - 17894014
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttct 117  Q
    |||| |||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||      
T  17894227 tttacccattgaacctttttcatgggatctccaatcacaaatgttgggttctcattacttgtcgttttctagtggcatagtctcatttccctaaattttc 17894128  T
Q  118 tcccaaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataa 217  Q
    ||||||||| ||||||||||| || |||| |||||| |||||||||| ||||| | ||||| ||||||||||||| ||||||| |||| |||| ||||||    
T  17894127 tcccaagggattttatatacggattcgctaaattcacaaatattgactaagacgtttctaagtcaattaacctcatatttcatcaagtttatataaataa 17894028  T
Q  218 gctcggattacaca 231  Q
     |||||||||||||    
T  17894027 actcggattacaca 17894014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 6668858 - 6669091
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttct 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| |||||    
T  6668858 tttacccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccgttacttgtcgttttctagtggcaaagtctcattttcctaactttct 6668957  T
Q  118 tcccaaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctct-aattca-----attaacctcacatttcataaagtctataa 211  Q
    ||||||||||||||||||||| ||||||  |||||| ||  |||||| ||||| ||||| ||||||     | | |||||  ||||||| |||| |||||    
T  6668958 tcccaaggggttttatatacggatccgcaaaattcacaatcattgactaagacgtctctaaattcacaatcaattacctcttatttcatcaagtttataa 6669057  T
Q  212 aaataagctcggattacacattagatttatacac 245  Q
    |||||| ||||||||||||| || ||||||||||    
T  6669058 aaataaactcggattacacaataaatttatacac 6669091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 231
Target Start/End: Original strand, 8990036 - 8990242
Alignment:
Q  23 ccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttcttccca 122  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||| | ||||| |   |||||||||     
T  8990036 ccattgaacctttttcatgggatctcaaatcataaaggttgggttcccatcacttgtcgttttcgagtggcatagtc-cctttccttcgttttcttccc- 8990133  T
Q  123 aggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataagctcg 222  Q
      || |||| | ||||||| || | |||||| |||||||||| ||||| ||||||| |||||||| |||  ||||||| |||| ||||||| ||| ||||    
T  8990134 gtggtttttgtctacgaattcgttaaattcacaaatattgactaagacgtctctaagtcaattaatctcgtatttcatcaagtttataaaagtaaactcg 8990233  T
Q  223 gattacaca 231  Q
    |||||||||    
T  8990234 gattacaca 8990242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 6805846 - 6805625
Alignment:
Q  22 tccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttcttccc 121  Q
    ||||||||||||| ||||||||||||||||||| |||||| | |||||||| |||| | |||||| |||||||||||| ||||||| |   |||||||||    
T  6805846 tccattgaacctttttcatgggatctccaatcataaaggtagtgttcccatcacttattgttttcgagtggcatagtcacatttccttctttttcttccc 6805747  T
Q  122 aaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataagctc 221  Q
     | || |||| | ||||||| || | |||||| |||||||||| ||| | ||||| | |||||||| |||| ||||| |  ||| ||||||||||| |||    
T  6805746 ga-ggtttttgtctacgaattcgttaaattcacaaatattgactaagccgtctcttaatcaattaatctcatatttcgtcgagtatataaaaataaactc 6805648  T
Q  222 ggattacacattagatttataca 244  Q
     | || |||| || |||||||||    
T  6805647 agttttcacaataaatttataca 6805625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 6685240 - 6685190
Alignment:
Q  27 tgaaccttcttcatgggatctccaatcacaaaggttgggttcccattactt 77  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| ||||    
T  6685240 tgaaccttattcatgggatctccaatcacaaaggttgggtacccatcactt 6685190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 572677 - 572727
Alignment:
Q  27 tgaaccttcttcatgggatctccaatcacaaaggttgggttcccattactt 77  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||| ||||    
T  572677 tgaaccttattcatgggatctccaatcacatatgttgggttcccatcactt 572727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 6661364 - 6661414
Alignment:
Q  27 tgaaccttcttcatgggatctccaatcacaaaggttgggttcccattactt 77  Q
    |||||||| ||||||||||||||||||||||||||||| || |||| ||||    
T  6661364 tgaaccttattcatgggatctccaatcacaaaggttggttttccatcactt 6661414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 14657157 - 14656936
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttct 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  14657157 tttacccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttcgagtggcaaagtctcatttccctaaatttct 14657058  T
Q  118 tcccaaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataa 217  Q
    ||| ||||||||||||||||| ||||||||||| || |||||||||| ||||||||||||| |||| | |||||  ||||||| || ||||||| |||||    
T  14657057 tcctaaggggttttatatacggatccgcttaatccacaaatattgactaagacatctctaagtcaaat-acctcttatttcatcaaatctataataataa 14656959  T
Q  218 gctcggattacacattagattta 240  Q
     || ||||||||||||| |||||    
T  14656958 acttggattacacattaaattta 14656936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 42254611 - 42254836
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttct 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  42254611 tttacccattgaaccttcttcatgggatctccaatcacaaaggttgg-ttcccattacttgtcgttttcgagtggcaaagtctcatttccctaaatttct 42254709  T
Q  118 tcccaaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataa 217  Q
    ||||||||||||||||||||| ||  |||||||||| ||| |||||| ||||| ||||||| |||||||| |||| ||||||| |||| |||||||||||    
T  42254710 tcccaaggggttttatatacggatatgcttaattcacaaaaattgactaagacgtctctaagtcaattaaactcatatttcatcaagtttataaaaataa 42254809  T
Q  218 gctcggattacacattagatttataca 244  Q
     ||||||| ||||| || ||| |||||    
T  42254810 actcggatcacacaataaattaataca 42254836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 19931171 - 19931397
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttct 117  Q
    |||| ||||||||||||||||||||||| | |||||||||||||||||||| || |||||||||||||| ||||| | ||||||||||||||||||||||    
T  19931171 tttacccattgaaccttcttcatgggatttgcaatcacaaaggttgggttcgcaatacttgtcgttttcgagtggtaaagtctcatttccctaaatttct 19931270  T
Q  118 tcccaaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataa 217  Q
    | ||||||| ||||||||||| |||||||||||||| ||| |||||| ||||| ||||||| |||||||| |||| ||||||| |||| ||||| | |||    
T  19931271 ttccaagggcttttatatacggatccgcttaattcacaaaaattgactaagacgtctctaagtcaattaaactcatatttcatcaagtttataatagtaa 19931370  T
Q  218 gctcggattacacattagatttataca 244  Q
     ||||||| ||||| || ||| |||||    
T  19931371 actcggatcacacaataaattaataca 19931397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 53727792 - 53727855
Alignment:
Q  23 ccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttc 86  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  53727792 ccattgaaccttcttcatgggatctccagtcacaaaggttgggttaccattacttgtcgttttc 53727855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 32895207 - 32895123
Alignment:
Q  23 ccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttcc 107  Q
    ||||| |||||  ||||||||||||||| ||| |||||||||||| |||| |||||||||||||  |||||||||||||||||||    
T  32895207 ccattaaacctatttcatgggatctccattcataaaggttgggtttccatcacttgtcgttttcgtgtggcatagtctcatttcc 32895123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 11635231 - 11635288
Alignment:
Q  24 cattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcg 81  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||    
T  11635231 cattgaaccttcttcatgggatctcaaatcacaaaggttgggttcctatcacttgtcg 11635288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 16363991 - 16364036
Alignment:
Q  24 cattgaaccttcttcatgggatctccaatcacaaaggttgggttcc 69  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||    
T  16363991 cattgaaccttcctcatgggatctccaatcacaaaggttgagttcc 16364036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 38641718 - 38641927
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttct 117  Q
    |||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||   |||||||||||||||||||||    
T  38641718 tttacccattgaaccttcttcatgggatctccaatcacaaagtatgggttcccattacttgtcgttttcgagtggctatgtctcatttccctaaatttct 38641817  T
Q  118 tcccaaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataa 217  Q
    ||||||||||||||||||||| ||||||| |||||| | |||||||| ||||| ||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  38641818 tcccaaggggttttatatacggatccgctaaattcacatatattgactaagacgtctctaagtcaattaacctcatatttcatcaagtctataaaaataa 38641917  T
Q  218 gctcggatta 227  Q
     |||||||||    
T  38641918 actcggatta 38641927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 43656981 - 43656762
Alignment:
Q  22 tccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttcttccc 121  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |||||| |   | |||| ||    
T  43656981 tccattgaacctttttcataggatctccaatcataaaggttgggttcccatcacttgtcgttttcgagtggcatagtcttatttccttctttctctt-cc 43656883  T
Q  122 aaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataagctc 221  Q
      ||| |||| |  |||||| || | |||||| |||||||||| ||||  ||||| | |||||||| |||| |||||||  ||||  ||||||||| |||    
T  43656882 tggggtttttgtcaacgaattcgttaaattcacaaatattgactaagatgtctcttaatcaattaatctcatatttcatcgagtc--taaaaataaactc 43656785  T
Q  222 ggattacacattagatttataca 244  Q
    ||||| |||  || |||||||||    
T  43656784 ggatttcactataaatttataca 43656762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 31182906 - 31182861
Alignment:
Q  24 cattgaaccttcttcatgggatctccaatcacaaaggttgggttcc 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31182906 cattgaaccttcttcatgggatctccaatcacaaaggttgggttcc 31182861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 9032543 - 9032484
Alignment:
Q  19 ttatccat-tgaaccttcttcatgggatctccaatcacaaaggttgggttcccattactt 77  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  9032543 ttatccatatgaaccttattcatgggatctccaatcacaaaggttgggttcccatcactt 9032484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 38677733 - 38677691
Alignment:
Q  27 tgaaccttcttcatgggatctccaatcacaaaggttgggttcc 69  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38677733 tgaaccttcttcatgggatctccaatcacaaaggttgggttcc 38677691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 21256799 - 21256849
Alignment:
Q  27 tgaaccttcttcatgggatctccaatcacaaaggttgggttcccattactt 77  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||| ||||    
T  21256799 tgaaccttattcatgggatctccaatcacaaatgttgggttcccatcactt 21256849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 44316005 - 44315963
Alignment:
Q  27 tgaaccttcttcatgggatctccaatcacaaaggttgggttcc 69  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  44316005 tgaaccttattcatgggatctccaatcacaaaggttgggttcc 44315963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 29278193 - 29278150
Alignment:
Q  27 tgaaccttcttcatgggatctccaatcacaaaggttgggttccc 70  Q
    |||||||| ||||||||||||| |||||||||||||||||||||    
T  29278193 tgaaccttattcatgggatctcaaatcacaaaggttgggttccc 29278150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 16086247 - 16086473
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttct 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||    
T  16086247 tttacccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagactcatatccctaaaattct 16086346  T
Q  118 tcccaaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataa 217  Q
    |||||| || ||||||||||| ||| |||||||||| |||||||||| ||||| ||||||| ||||||| ||||| ||||||| || |||||||||||||    
T  16086347 tcccaatggattttatatacggatctgcttaattcacaaatattgactaagacgtctctaagtcaattatcctcatatttcatcaaatctataaaaataa 16086446  T
Q  218 gctcggattacacattagatttataca 244  Q
     |||| ||| |||| || ||| |||||    
T  16086447 actcgaatttcacaataaattaataca 16086473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 31307757 - 31307633
Alignment:
Q  25 attgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttcttcccaag 124  Q
    ||||||||||||||||||| |||||||| |||||||||||| || |||||  ||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  31307757 attgaaccttcttcatgggttctccaataacaaaggttgggctctcattatctgtcgttttctagtggcatagtctcgtttccttaaatttcttcccaag 31307658  T
Q  125 gggttttatatacgaatccgcttaa 149  Q
    | |||||||||||| ||||||||||    
T  31307657 gagttttatatacggatccgcttaa 31307633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 26052437 - 26052353
Alignment:
Q  23 ccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttcc 107  Q
    ||||| |||||| ||||||||||||||| ||| |||||||||||| |||| |||||||||||||  |||||||||||||||||||    
T  26052437 ccattaaacctttttcatgggatctccattcataaaggttgggtttccatcacttgtcgttttcgtgtggcatagtctcatttcc 26052353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 25636103 - 25636153
Alignment:
Q  27 tgaaccttcttcatgggatctccaatcacaaaggttgggttcccattactt 77  Q
    |||||||| |||||||||||||||||||||||||||||||| |||| ||||    
T  25636103 tgaaccttattcatgggatctccaatcacaaaggttgggtttccatcactt 25636153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 1967917 - 1967704
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttct 117  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||   |||||||||||||||||||||    
T  1967917 tttacccattgaaccttcttcatgggatctccaagcacaaaggttgggttcccattacttgtcgttttcgagtggctatgtctcatttccctaaatttct 1967818  T
Q  118 tcccaaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataa 217  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||||| ||||| ||||||| ||||||||||||| ||||||| |||| ||| ||| |||    
T  1967817 tcccaaggggttttatatacggatccgctaaattcacaaatattgactaagacgtctctaagtcaattaacctcatatttcatcaagtttatgaaagtaa 1967718  T
Q  218 gctcggattacaca 231  Q
     || ||||||||||    
T  1967717 acttggattacaca 1967704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 29 - 229
Target Start/End: Complemental strand, 24172178 - 24171977
Alignment:
Q  29 aaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttcttcccaag-ggg 127  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||  ||||||| ||     
T  24172178 aaccttcttcatgggatctccaatcacaaaggttgggtttccattacttgtcgttttctagtggcgtagtctcatttccctaaattttctcccaagagga 24172079  T
Q  128 ttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataagctcggatta 227  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||| |||||||||||||||| || ||||||    
T  24172078 ttttatatacggatccgctaaattcataaatattgactaagacgtctctaagtcaattaacctcatatttcatcaagtctataaaaataaacttggatta 24171979  T
Q  228 ca 229  Q
    ||    
T  24171978 ca 24171977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 25 - 229
Target Start/End: Original strand, 49388542 - 49388746
Alignment:
Q  25 attgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttcttcccaag 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||    
T  49388542 attgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttcgagtggcagagtctcattttcctaaatttcttcccaag 49388641  T
Q  125 gggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataagctcgga 224  Q
    |||||||||||| | |||||||  ||||| |||||||||| ||||| | ||||| ||||||||||||| |||| || |||| ||| ||||||| ||||||    
T  49388642 gggttttatatatggatccgctagattcacaaatattgactaagacgtttctaagtcaattaacctcatattttatcaagtttatgaaaataaactcgga 49388741  T
Q  225 ttaca 229  Q
    |||||    
T  49388742 ttaca 49388746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 38826451 - 38826665
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttct 117  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||    
T  38826451 tttacccattgaacgttcttcatgggatctccaattacaaaggttgggttcccattacttgtcgttttcgaatggcgtagtctcatttccc-aaatttct 38826549  T
Q  118 tcccaaggggt--tttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaat 215  Q
    ||||||  |||  | |||||||| |||| ||||||||| |||||||||||||||| ||||||| ||||||||||||| ||||||| |||| |||||||||    
T  38826550 tcccaataggttgtatatatacggatccacttaattcacaaatattgaccaagacgtctctaagtcaattaacctcatatttcatcaagtttataaaaat 38826649  T
Q  216 aagctcggattacaca 231  Q
    || |||| ||||||||    
T  38826650 aaactcgaattacaca 38826665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 47325056 - 47325006
Alignment:
Q  22 tccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccat 72  Q
    ||||||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  47325056 tccattgaacctttttcatgggatctccaatcataaagattgggttcccat 47325006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 49874118 - 49874160
Alignment:
Q  27 tgaaccttcttcatgggatctccaatcacaaaggttgggttcc 69  Q
    |||||||| ||||||||||||||||||| |||| |||||||||    
T  49874118 tgaaccttattcatgggatctccaatcataaagattgggttcc 49874160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 24042578 - 24042789
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttct 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | |||||||| |||||||||||    
T  24042578 tttacccattgaaccttcttcatgggatctccaatcacaaaggttgggtttccattacttgtcgttttcgagtggcagaatctcattttcctaaatttct 24042677  T
Q  118 tcccaaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataa 217  Q
    ||||||||| ||||||||||| ||||||| |||||| |||||||||| ||||| ||||||| ||||||||||||  ||||||| |||| ||| |||||||    
T  24042678 tcccaagggtttttatatacggatccgctaaattcacaaatattgactaagacgtctctaagtcaattaacctcgtatttcatcaagtttatgaaaataa 24042777  T
Q  218 gctcggattaca 229  Q
     || ||||||||    
T  24042778 acttggattaca 24042789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 6950749 - 6950975
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttccctaaatttct 117  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||   |||||||||||||||||||||    
T  6950749 tttacccattgaaccttcttcatgggatctccaatcacaacggttgggttcctattacttgtcgttttcgagtggctatgtctcatttccctaaatttct 6950848  T
Q  118 tcccaaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaaaataa 217  Q
    || |||||||||||||||||| |||| ||||||||| ||| |||||| ||||| ||||||| |||||||| |||| ||||||| |||| |||||||| ||    
T  6950849 tcacaaggggttttatatacggatccacttaattcacaaaaattgactaagacgtctctaagtcaattaaactcatatttcatcaagtttataaaaacaa 6950948  T
Q  218 gctcggattacacattagatttataca 244  Q
     ||||||| ||||| || ||| |||||    
T  6950949 actcggatcacacaataaattaataca 6950975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 19975280 - 19975064
Alignment:
Q  18 tttatccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatt-----tccctaaa 112  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||     ||||||||    
T  19975280 tttacccattaaaccttcttcatgggatatccaatcacaaaggttgggttcccattacttgtcgtttttgagtggcatagtctcattatatttccctaaa 19975181  T
Q  113 tttcttcccaaggggttttatatacgaatccgcttaattcataaatattgaccaagacatctctaattcaattaacctcacatttcataaagtctataaa 212  Q
    ||||||||||||||| ||||||||   |||| || |||||| |||||||||| ||||||||||||| |||||||| |||| ||||||| |||| ||||||    
T  19975180 tttcttcccaaggggatttatataaagatccactaaattcacaaatattgactaagacatctctaagtcaattaaactcatatttcatcaagtttataaa 19975081  T
Q  213 aataagctcggattaca 229  Q
    ||||| ||| |||||||    
T  19975080 aataaactcagattaca 19975064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 27077341 - 27077256
Alignment:
Q  22 tccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttcc 107  Q
    |||||| |||||| ||||||||||||||| ||| |||||||||||| |||| |||||||||||||  |||||||||||||||||||    
T  27077341 tccattaaacctttttcatgggatctccattcataaaggttgggtttccatcacttgtcgttttcgtgtggcatagtctcatttcc 27077256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 15516110 - 15516065
Alignment:
Q  24 cattgaaccttcttcatgggatctccaatcacaaaggttgggttcc 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  15516110 cattgaaccttcttcatgggatctccaatcacaaaggttgggttcc 15516065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 34234604 - 34234560
Alignment:
Q  25 attgaaccttcttcatgggatctccaatcacaaaggttgggttcc 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34234604 attgaaccttcttcatgggatctccaatcacaaaggttgggttcc 34234560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 34096887 - 34096929
Alignment:
Q  27 tgaaccttcttcatgggatctccaatcacaaaggttgggttcc 69  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  34096887 tgaaccttattcatgggatctccaatcacaaaggttgggttcc 34096929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 201551 - 201467
Alignment:
Q  23 ccattgaaccttcttcatgggatctccaatcacaaaggttgggttcccattacttgtcgttttctagtggcatagtctcatttcc 107  Q
    |||||||||||| |||| |||||||||||||| |||||||||||| |||| ||||||||||||  ||||||||||||||||||||    
T  201551 ccattgaacctttttcacgggatctccaatcataaaggttgggttaccatcacttgtcgtttttgagtggcatagtctcatttcc 201467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 38365 - 38407
Alignment:
Q  27 tgaaccttcttcatgggatctccaatcacaaaggttgggttcc 69  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  38365 tgaaccttattcatgggatctccaatcacaaaggttgggttcc 38407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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