View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_6 (Length: 614)
Name: NF2498_low_6
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 47 - 397
Target Start/End: Complemental strand, 26217609 - 26217246
Alignment:
| Q |
47 |
aatccagcctatcataggatttactaatataaagtctatgagctacattaccttgattaactttcacct-------------atgaacaatttcaatggt |
133 |
Q |
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| T |
26217609 |
aatccaacctatcataggatttactaatataaagtctatgagctacattaccttgattaactttcaccttaggtttcacacgatgaacaatttcaatggt |
26217510 |
T |
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| Q |
134 |
tgtcattgcattatcgagaatagagtaacttgacacaaaagctgattgatttttgtatatacacttatcaagtacactttcaacatgttggctaatactt |
233 |
Q |
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| T |
26217509 |
tgtcattgcattatcgagaatagagtaacttgacacaaaagctgattgatttttgtatatacacttatcaagtacactttcaacatgttggctaatactt |
26217410 |
T |
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| Q |
234 |
taaccacaactttatagagcacattacataaagctatagatgaataaacctctcctatagggattagatcaatgtttgttgagcttgtaattaggctagg |
333 |
Q |
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| T |
26217409 |
taaccacaactttatagagcacattacataaagctatagatgaataaacctctcctatagggattagatcaatgtttgttgagtttgtaattaggctagg |
26217310 |
T |
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| Q |
334 |
aggaaagataacagagaccttcaaagtgcaacccgcagtaaatatatcatgaccacaatttttc |
397 |
Q |
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| T |
26217309 |
aggaaagataacagagaccttcaaagtgcaacccgcagtaaatatatgatgaccacaatttttc |
26217246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 394 - 606
Target Start/End: Complemental strand, 26217187 - 26216975
Alignment:
| Q |
394 |
tttcatagagaagatggtttccttgaattcttcaaataggaaagcagcaaatagaaactcattatccatactagtgaatagtgatagatggattaatggc |
493 |
Q |
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| T |
26217187 |
tttcatagagaagatggtttccttgaattcttcaaataggaaagcggcaaatagaaactcattatccatactagtgaatagtgttagatggattaatggt |
26217088 |
T |
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| Q |
494 |
attaagaatcgcctcactggagctattctgcttttaaaaaagttctaaaaaataatcacaagccatggaagtcattccgtcccacgttctacatattgtg |
593 |
Q |
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| T |
26217087 |
attaagaatcgcctcactggtgctattctgcttctaaaaaagttctaaaaaataatcacaagccatggaagtcattccgtcccgcgttctacatattgtg |
26216988 |
T |
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| Q |
594 |
ccatcttcatctc |
606 |
Q |
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| T |
26216987 |
ccatcttcatctc |
26216975 |
T |
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