View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_67 (Length: 236)
Name: NF2498_low_67
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_67 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 24832580 - 24832800
Alignment:
| Q |
15 |
atattttcatgttgccgtgccaaaatatctaccacaatcaccaaacttaaatagcccttcattgcacaaaatacacaaaactagaagtaagatnnnnnnn |
114 |
Q |
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| T |
24832580 |
atattttcatgttgccgtgccaaaatatctaccacaatcaccaaacttaaatagcccttcattgcacaaaatacacaaaactagaagtaagataaaaaa- |
24832678 |
T |
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| Q |
115 |
ttcaatcatctataatttacacaatcttagaaatcaaagagaagaaggtaaacnnnnnnntggaggatgttagaaggccaaacagaagtgacactcatct |
214 |
Q |
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| T |
24832679 |
ttgaatcatctataatttacacaatcttagaaatcaaagagaagaaggtaaacaaaaaaatggaggatgttagaaggccaaacagaagtgatactcatct |
24832778 |
T |
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| Q |
215 |
ctcagctgaagaagaagcatcc |
236 |
Q |
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|||||||||||||||||||||| |
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| T |
24832779 |
ctcagctgaagaagaagcatcc |
24832800 |
T |
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