View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_69 (Length: 235)
Name: NF2498_low_69
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36760109 - 36759888
Alignment:
| Q |
1 |
ataaggaggagtttttgattgtgaagcttcatctttgttcttttggttcaagattgaactccatatatccaattcactagtgacttgcatcaccatattt |
100 |
Q |
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| T |
36760109 |
ataaggaggagtttttgattgtgaagcttcatctttgttcttttggttcaagattgaactccatatatccaattcactagtgacttgcatcaccatattt |
36760010 |
T |
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| Q |
101 |
tctttgttttgaatcttgttgttagctgcaaaatgtaagtaacactaattaggaaaatgaaaattagaaaggatgaatctatctatcttgcgttttgttc |
200 |
Q |
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| T |
36760009 |
tctttgctttgaatcttgttgttagctgcaaaatgtaagtaacactaattaggaaaatgaaaattagaaaggatgaatctatctatcttgcgttttgttc |
36759910 |
T |
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| Q |
201 |
tgtcatgtgttatcacctttct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
36759909 |
tgtcatgtgttatcacctttct |
36759888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 36788105 - 36788023
Alignment:
| Q |
1 |
ataaggaggagtttttgattgtgaagcttcatctttgttcttttggttcaagattgaactccatatatccaattcactagtga |
83 |
Q |
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| T |
36788105 |
ataaggaggagtttttgattgtgaagcttcatctttgttcttttggttcaagattgaactccatatatccaattcacttgtga |
36788023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 36796508 - 36796423
Alignment:
| Q |
1 |
ataaggaggagtttttgattgtgaagcttcatctttgttcttttggttcaagattgaactccatatatccaattcactagtgactt |
86 |
Q |
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| T |
36796508 |
ataaggaggagtttttgaatgtgaagcttcatctttgttcttttggttcaagattgaactccatatatccaattcactagtcactt |
36796423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 95 - 219
Target Start/End: Complemental strand, 36796341 - 36796215
Alignment:
| Q |
95 |
atattttctttgttttgaatcttgttgttagctgca-aaatgtaagtaacactaattaggaaaatgaaaattagaaaggatgaatctatctatc--ttgc |
191 |
Q |
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| T |
36796341 |
atattttctttgctttgaatcttgttgttagctgcataaatgtaagtaacactacttaggaaaatgaaaatt-gaaaggatgaatctatctatctattgt |
36796243 |
T |
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| Q |
192 |
gttttgttctgtcatgtgttatcacctt |
219 |
Q |
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| T |
36796242 |
gttttattttgtcacatgttatcacctt |
36796215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 36775423 - 36775339
Alignment:
| Q |
1 |
ataaggaggagtttttgattgtgaagcttcatctttgttcttttggttcaagattgaactccatatatccaattcactagtgact |
85 |
Q |
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| T |
36775423 |
ataaggaggagtttttgattgtgaagcttcatctttctttttttgggtcaagattgaactccatatatccaattcaccagtgact |
36775339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 36775259 - 36775216
Alignment:
| Q |
87 |
gcatcaccatattttctttgttttgaatcttgttgttagctgca |
130 |
Q |
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| T |
36775259 |
gcatcaccatattttctttgctttgaacctttttgttagctgca |
36775216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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