View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_70 (Length: 228)
Name: NF2498_low_70
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 24 - 214
Target Start/End: Original strand, 37510496 - 37510686
Alignment:
| Q |
24 |
caaagttggagtttactccctaacgaaagggtaaatttcatatcgaatattgcaacttccaccaacaactctgcctccnnnnnnnccatcacaacaattt |
123 |
Q |
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| T |
37510496 |
caaagttggagtttactccctaacgaaagggtaaatttcatatcgaatattgcaacttccaccaacaactctgcctcctttttttccatcacaacaattt |
37510595 |
T |
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| Q |
124 |
ggaagttcactaattgcaccatcaagacacttcttacaatcaacactagaaatgtctcttgtgcattgagttagcccataaactctctctg |
214 |
Q |
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| T |
37510596 |
ggaagttcactaattgcaccatcaagacacttcttacaatcaacactagaaatgtctctagtgcattgagttagcccataaactctctctg |
37510686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 52 - 205
Target Start/End: Complemental strand, 37531332 - 37531179
Alignment:
| Q |
52 |
gggtaaatttcatatcgaatattgcaacttccaccaacaactctgcctccnnnnnnnccatcacaacaatttggaagttcactaattgcaccatcaagac |
151 |
Q |
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| T |
37531332 |
gggtatatctcatatcgaaagttgcagcttcccccaacaactctacctccttcttttccatcacaacaatttcgaagttcattaattgcagcatcaagac |
37531233 |
T |
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| Q |
152 |
acttcttacaatcaacactagaaatgtctcttgtgcattgagttagcccataaa |
205 |
Q |
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| T |
37531232 |
aattcttgcaatcagcactagaaaggtctctagtgcactgagttaacccataaa |
37531179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 37534676 - 37534578
Alignment:
| Q |
76 |
caacttccaccaacaactctgcctccnnnnnnnccatcacaacaatttggaagttcactaattgcaccatcaagacacttcttacaatcaacactagaa |
174 |
Q |
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| T |
37534676 |
caacttccaccaacaactctacctccttcttttccatcacaacaatttggaagttcattaattgcatcatcaagacacttcttacaatcaatactagaa |
37534578 |
T |
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