View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2498_low_71 (Length: 227)

Name: NF2498_low_71
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2498_low_71
NF2498_low_71
[»] chr4 (7 HSPs)
chr4 (1-147)||(6669240-6669382)
chr4 (6-147)||(17893697-17893835)
chr4 (107-222)||(6684701-6684818)
chr4 (107-147)||(8990421-8990461)
chr4 (110-222)||(573113-573227)
chr4 (107-222)||(5694208-5694325)
chr4 (107-210)||(6661722-6661827)
[»] chr2 (3 HSPs)
chr2 (21-147)||(73784-73907)
chr2 (45-139)||(10945317-10945409)
chr2 (106-139)||(10939448-10939481)
[»] chr8 (3 HSPs)
chr8 (105-222)||(21257241-21257360)
chr8 (106-147)||(38642115-38642156)
chr8 (107-222)||(29277671-29277792)
[»] chr6 (3 HSPs)
chr6 (85-147)||(6951140-6951200)
chr6 (106-139)||(24042977-24043010)
chr6 (106-147)||(19974842-19974883)
[»] chr3 (2 HSPs)
chr3 (85-147)||(19931561-19931621)
chr3 (106-147)||(42255001-42255042)
[»] scaffold0028 (1 HSPs)
scaffold0028 (78-139)||(126369-126428)
[»] chr7 (3 HSPs)
chr7 (107-222)||(2433429-2433546)
chr7 (106-139)||(13817795-13817828)
chr7 (78-147)||(31208034-31208101)
[»] chr1 (2 HSPs)
chr1 (108-139)||(49388934-49388965)
chr1 (78-137)||(38826854-38826911)
[»] chr5 (2 HSPs)
chr5 (106-136)||(16086659-16086689)
chr5 (106-138)||(25636538-25636570)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 6669382 - 6669240
Alignment:
Q  1 ccacctatctttctcaatgtgtgggtgttgttacttgacaattgttcaagtagacctgtttgataaattcacacatgaatttattttcccccttcgtaaa 100  Q
    |||| |||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||  ||||    
T  6669382 ccacttatctttctcaatgtgggggtgttgtcacttgaaaattgttcaagtagacctgtttgataaattcacacatgaatttaattt-cccctttttaaa 6669284  T
Q  101 gataagttgtcgcttagtatttatctaagtagacctgataaagtata 147  Q
       | |||||||||||||||||| ||||||| |||||||||||||||    
T  6669283 ---atgttgtcgcttagtatttaactaagtatacctgataaagtata 6669240  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 17893697 - 17893835
Alignment:
Q  6 tatctttctcaatgtgtgggtgttgttacttgacaattgttcaagtagacctgtttgataaattcacacatgaatttattttcccccttcgtaaagataa 105  Q
    |||||| || |||||| ||||| ||| |||||| |||| ||||||||||| | |||||||||||||||| |||||||| |||  ||||| ||||||||      
T  17893697 tatcttactaaatgtgggggtgctgtcacttgaaaattattcaagtagacatttttgataaattcacacgtgaatttaattt-tccctttgtaaagat-- 17893793  T
Q  106 gttgtcgcttagtatttatctaagtagacctgataaagtata 147  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  17893794 gttgtcgctcagtatttatctaagtagacctgatgaagtata 17893835  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 107 - 222
Target Start/End: Original strand, 6684701 - 6684818
Alignment:
Q  107 ttgtcgcttagtatttatctaagtagacctgataaagtataataagaaagtcagttagac--tatatgaaatattattttcagttgatgaaccatttcat 204  Q
    ||||||||||| |||||||||||||||| |||| ||||||| |||  ||||||||| |||  |||||||||||||||||  |||||||||||||||  ||    
T  6684701 ttgtcgcttagaatttatctaagtagacatgatgaagtatattaaagaagtcagtttgacaatatatgaaatattatttagagttgatgaaccattgtat 6684800  T
Q  205 taaaataatgaaatgatg 222  Q
     ||||||||  |||||||    
T  6684801 caaaataatacaatgatg 6684818  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 8990461 - 8990421
Alignment:
Q  107 ttgtcgcttagtatttatctaagtagacctgataaagtata 147  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  8990461 ttgtcgcttagtatttatctaagtagacctgatgaagtata 8990421  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 573227 - 573113
Alignment:
Q  110 tcgcttagtatttatctaagtagacctgataaagtataataagaaagtcagttagac--tatatgaaatattattttcagttgatgaaccatttcattaa 207  Q
    |||||||| ||||||||||||||||||||| |||||||  ||| | |  |||| |||  ||||||||||||| |||  ||| |||||||||||  || ||    
T  573227 tcgcttagaatttatctaagtagacctgatgaagtatataaaggatgcaagtttgacaatatatgaaatattgtttagagtagatgaaccattgtatcaa 573128  T
Q  208 aataatgaaatgatg 222  Q
    ||||||| |||||||    
T  573127 aataatgcaatgatg 573113  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 5694325 - 5694208
Alignment:
Q  107 ttgtcgcttagtatttatctaagtagacctgataaagtataataagaaagtcagttagac--tatatgaaatattattttcagttgatgaaccatttcat 204  Q
    |||||||||||  |||||||||||||||||||| |  ||||  ||| ||||| ||| |||  ||||||||||||| |||  ||||||||||| ||| |||    
T  5694325 ttgtcgcttagactttatctaagtagacctgatgatttatatcaaggaagtccgtttgacaatatatgaaatattttttagagttgatgaactattgcat 5694226  T
Q  205 taaaataatgaaatgatg 222  Q
     ||| ||||| |||||||    
T  5694225 caaagtaatgcaatgatg 5694208  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 210
Target Start/End: Complemental strand, 6661827 - 6661722
Alignment:
Q  107 ttgtcgcttagtatttatctaagtagacctgataaagtataataagaaagtcagtt--agactatatgaaatattattttcagttgatgaaccatttcat 204  Q
    ||||||||||| |||||||||||||||| |||| | |||||  ||  |||||||||  | | ||| |||||||||||||  |||||||| |||||| |||    
T  6661827 ttgtcgcttagaatttatctaagtagacttgatgacgtatatcaaagaagtcagtttaacaatatgtgaaatattatttagagttgatgtaccattgcat 6661728  T
Q  205 taaaat 210  Q
    | ||||    
T  6661727 tgaaat 6661722  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 73907 - 73784
Alignment:
Q  21 gtgggtgttgttacttgacaattgttcaagtagacctgtttgataaattcacacatgaatttattttcccccttcgtaaagataagttgtcgcttagtat 120  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |||| || |||||  ||||| ||||| |||    
T  73907 gtgggtgttgtcacttgaaaattgttcaagtagacctgtttgataaattcacacgtgaatataattt-ctcctttgtgaagat--gttgttgcttactat 73811  T
Q  121 ttatctaagtagacctgataaagtata 147  Q
    |||||||||||||| |||| |||||||    
T  73810 ttatctaagtagacatgatgaagtata 73784  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 10945409 - 10945317
Alignment:
Q  45 ttcaagtagacctgtttgataaattcacacatgaatttattttcccccttcgtaaagataagttgtcgcttagtatttatctaagtagacctgat 139  Q
    ||||||||||| ||| | ||||| | |  ||| ||| ||||||||||||| || |||||  |||||| |||||||||||||||||||||||||||    
T  10945409 ttcaagtagacatgtataataaaattaatcataaatatattttccccctttgtgaagat--gttgtcacttagtatttatctaagtagacctgat 10945317  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 10939481 - 10939448
Alignment:
Q  106 gttgtcgcttagtatttatctaagtagacctgat 139  Q
    ||||||||||||||||||||||||||||||||||    
T  10939481 gttgtcgcttagtatttatctaagtagacctgat 10939448  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 21257360 - 21257241
Alignment:
Q  105 agttgtcgcttagtatttatctaagtagacctgataaagtataataagaaagtcagttagac--tatatgaaatattattttcagttgatgaaccatttc 202  Q
    ||||||||||||| ||||||||||||||||||||| |||||||  ||| | |  |||| |||  ||||||||||||| |||  ||||||||||||||| |    
T  21257360 agttgtcgcttagaatttatctaagtagacctgatgaagtatataaaggatgcaagtttgacaatatatgaaatattgtttagagttgatgaaccattgc 21257261  T
Q  203 attaaaataatgaaatgatg 222  Q
    || ||||||||  |||||||    
T  21257260 atcaaaataattgaatgatg 21257241  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 38642156 - 38642115
Alignment:
Q  106 gttgtcgcttagtatttatctaagtagacctgataaagtata 147  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  38642156 gttgtcgcttagtatttatctaagtagacctgatgaagtata 38642115  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 222
Target Start/End: Original strand, 29277671 - 29277792
Alignment:
Q  107 ttgtcgcttagtatttatctaagtagacctgataaagtata---at-aagaaagtcagttagac--tatatgaaatattattttcagttgatgaaccatt 200  Q
    |||||||||||  ||||||||||| ||||||||  ||||||   || ||| || |||||| |||  ||||||||||||| |||  |||||||||||||||    
T  29277671 ttgtcgcttagactttatctaagtcgacctgatggagtatatatatcaaggaaatcagtttgacaatatatgaaatattgtttagagttgatgaaccatt 29277770  T
Q  201 tcattaaaataatgaaatgatg 222  Q
     ||| ||||||||| |||||||    
T  29277771 gcatcaaaataatgcaatgatg 29277792  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 6951200 - 6951140
Alignment:
Q  85 tttcccccttcgtaaagataagttgtcgcttagtatttatctaagtagacctgataaagtata 147  Q
    |||||||||| ||||||||  |||||||||||||||||||||||||||| |||||||| ||||    
T  6951200 tttccccctttgtaaagat--gttgtcgcttagtatttatctaagtagatctgataaaatata 6951140  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 24043010 - 24042977
Alignment:
Q  106 gttgtcgcttagtatttatctaagtagacctgat 139  Q
    ||||||||||||||||||||||||||||||||||    
T  24043010 gttgtcgcttagtatttatctaagtagacctgat 24042977  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 19974842 - 19974883
Alignment:
Q  106 gttgtcgcttagtatttatctaagtagacctgataaagtata 147  Q
    |||||||||||||||||||||| ||||| ||||| |||||||    
T  19974842 gttgtcgcttagtatttatctatgtagatctgatgaagtata 19974883  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 19931621 - 19931561
Alignment:
Q  85 tttcccccttcgtaaagataagttgtcgcttagtatttatctaagtagacctgataaagtata 147  Q
    |||||||||| || |||||  ||||||||||||||||||||||||||||||||||||| ||||    
T  19931621 tttccccctttgtgaagat--gttgtcgcttagtatttatctaagtagacctgataaaatata 19931561  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 42255042 - 42255001
Alignment:
Q  106 gttgtcgcttagtatttatctaagtagacctgataaagtata 147  Q
    |||||||||||||||||||| || ||||||||||||| ||||    
T  42255042 gttgtcgcttagtatttatcgaaatagacctgataaaatata 42255001  T

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Target: scaffold0028 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 126369 - 126428
Alignment:
Q  78 aatttattttcccccttcgtaaagataagttgtcgcttagtatttatctaagtagacctgat 139  Q
    ||||||||||||||||| || |||||  |||||| |||||||||||||||||||||||||||    
T  126369 aatttattttccccctttgtgaagat--gttgtctcttagtatttatctaagtagacctgat 126428  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 222
Target Start/End: Original strand, 2433429 - 2433546
Alignment:
Q  107 ttgtcgcttagtatttatctaagtagacctgataaagtataataagaaagtcagttagac--tatatgaaatattattttcagttgatgaaccatttcat 204  Q
    |||||||||||  |||||||||||| ||||||| ||  |||  ||| |||||| || |||  ||||||||||||| |||  ||||||||||||||| |||    
T  2433429 ttgtcgcttagactttatctaagtaaacctgatgaaacatatcaaggaagtcaatttgacaatatatgaaatattgtttagagttgatgaaccattgcat 2433528  T
Q  205 taaaataatgaaatgatg 222  Q
     ||||||||| |||||||    
T  2433529 caaaataatgcaatgatg 2433546  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 13817795 - 13817828
Alignment:
Q  106 gttgtcgcttagtatttatctaagtagacctgat 139  Q
    ||||||||||||||||||||||||||||||||||    
T  13817795 gttgtcgcttagtatttatctaagtagacctgat 13817828  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 31208101 - 31208034
Alignment:
Q  78 aatttattttcccccttcgtaaagataagttgtcgcttagtatttatctaagtagacctgataaagtata 147  Q
    ||||||||||||| ||| || |||||  ||||||||||||| ||||||||||||||| || | |||||||    
T  31208101 aatttattttccctctttgtgaagat--gttgtcgcttagtgtttatctaagtagacatggtgaagtata 31208034  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 139
Target Start/End: Complemental strand, 49388965 - 49388934
Alignment:
Q  108 tgtcgcttagtatttatctaagtagacctgat 139  Q
    ||||||||||||||||||||||||||||||||    
T  49388965 tgtcgcttagtatttatctaagtagacctgat 49388934  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 38826911 - 38826854
Alignment:
Q  78 aatttattttcccccttcgtaaagataagttgtcgcttagtatttatctaagtagacctg 137  Q
    |||||||||| |||||| || |||||  |||||||| ||||||||||||||||| |||||    
T  38826911 aatttatttttcccctttgtgaagat--gttgtcgcatagtatttatctaagtatacctg 38826854  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 136
Target Start/End: Complemental strand, 16086689 - 16086659
Alignment:
Q  106 gttgtcgcttagtatttatctaagtagacct 136  Q
    |||||||||||||||||||||||||||||||    
T  16086689 gttgtcgcttagtatttatctaagtagacct 16086659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 25636570 - 25636538
Alignment:
Q  106 gttgtcgcttagtatttatctaagtagacctga 138  Q
    |||||||||||| ||||||||||||||||||||    
T  25636570 gttgtcgcttagaatttatctaagtagacctga 25636538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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