View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_73 (Length: 227)
Name: NF2498_low_73
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_73 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0120 (1 HSPs) |
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| [»] scaffold0069 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 9415218 - 9415428
Alignment:
| Q |
1 |
ccacataggcaaaataagacgcccatgctaacaagtcacacaggctaaacaagccacaaaggctatacaaatgtcaagataatgaaacaagccacccaga |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9415218 |
ccacataggctaaataagacgcccatgctaacaagtcacacagattaaacaagccacaaaggctatacaaatgtcaagataatgaaacaagccacccagg |
9415317 |
T |
|
| Q |
101 |
ttaaacaaggcacaaaggttatgcacatccatgccatgatattaaatttcaaaaatattctagcaaactagacaaatagaaaatacaactcagccactaa |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9415318 |
ttaaacaaggcacacaggttatgcacatccatgccatgatattaaatttcaaaaatattctagcaaactagacaaatagaaaatacaactcagccactaa |
9415417 |
T |
|
| Q |
201 |
gacaacatatc |
211 |
Q |
| |
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| ||||||||| |
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| T |
9415418 |
ggcaacatatc |
9415428 |
T |
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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 11387531 - 11387473
Alignment:
| Q |
37 |
cacacaggctaaacaagccacaaaggctatacaaatgtcaagataatgaaacaagccac |
95 |
Q |
| |
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|||| |||||||||||||||||||| |||| ||||||||| |||||||||||||||||| |
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| T |
11387531 |
cacaaaggctaaacaagccacaaagactatgcaaatgtcatgataatgaaacaagccac |
11387473 |
T |
|
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Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 356548 - 356615
Alignment:
| Q |
30 |
aacaagtcacacaggctaaaca--agccacaaaggctatacaaatgtcaagataatgaaacaagccac |
95 |
Q |
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| T |
356548 |
aacaagccacacaggctaaaaacgagccacacaggctatgcaaatgtcatgataatgaaacaagccac |
356615 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 10276668 - 10276601
Alignment:
| Q |
30 |
aacaagtcacacaggctaa--acaagccacaaaggctatacaaatgtcaagataatgaaacaagccac |
95 |
Q |
| |
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|||||| |||||||||||| || ||||||| ||||||| ||||||||| |||||||||||||||||| |
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| T |
10276668 |
aacaagccacacaggctaagaacgagccacacaggctatgcaaatgtcatgataatgaaacaagccac |
10276601 |
T |
|
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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 16110940 - 16110892
Alignment:
| Q |
47 |
aaacaagccacaaaggctatacaaatgtcaagataatgaaacaagccac |
95 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
16110940 |
aaacgagccacaaaggctatgcaaatgtcatgataatgaaacaagccac |
16110892 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 24275963 - 24275904
Alignment:
| Q |
37 |
cacacaggctaa-acaagccacaaaggctatacaaatgtcaagataatgaaacaagccac |
95 |
Q |
| |
|
|||||||||||| || ||||||||||||||| ||||||||| ||||||| |||||||||| |
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| T |
24275963 |
cacacaggctaagacgagccacaaaggctatgcaaatgtcatgataatggaacaagccac |
24275904 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 24276027 - 24275995
Alignment:
| Q |
30 |
aacaagtcacacaggctaaacaagccacaaagg |
62 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
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|
| T |
24276027 |
aacaagtcacaaaggctaaacaagccacaaagg |
24275995 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0120 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0120
Description:
Target: scaffold0120; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 2332 - 2379
Alignment:
| Q |
48 |
aacaagccacaaaggctatacaaatgtcaagataatgaaacaagccac |
95 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| |||||||||| |
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|
| T |
2332 |
aacaagccacaaaggctatgcaaatgtcatgataatgtaacaagccac |
2379 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 10250791 - 10250733
Alignment:
| Q |
37 |
cacacaggctaaacaagccacaaaggctatacaaatgtcaagataatgaaacaagccac |
95 |
Q |
| |
|
|||| ||| ||||||||||||| ||||||| ||||||| | |||||||||||||||||| |
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| T |
10250791 |
cacaaaggttaaacaagccacacaggctatgcaaatgtgatgataatgaaacaagccac |
10250733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 11276 - 11228
Alignment:
| Q |
52 |
agccacaaaggctatacaaatgtcaagataatgaaacaagccacccaga |
100 |
Q |
| |
|
||||||| ||||||| ||||||||| |||||||||||||||||| |||| |
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|
| T |
11276 |
agccacacaggctatgcaaatgtcatgataatgaaacaagccacacaga |
11228 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 11166245 - 11166311
Alignment:
| Q |
30 |
aacaagtcacacaggctaaa-caagccacaaaggctatacaaatgtcaagataatgaaacaagccac |
95 |
Q |
| |
|
|||||| |||| |||||||| | ||||||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
11166245 |
aacaagccacaaaggctaaaacgagccacaaaggctatgcaaatgttgtgataatgaaacaagccac |
11166311 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 16972447 - 16972393
Alignment:
| Q |
46 |
taaacaagccacaaaggctatacaaatgtcaagataatgaaacaagccacccaga |
100 |
Q |
| |
|
||||||||||||| | ||||| ||||||||| |||||||||||||| ||| |||| |
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|
| T |
16972447 |
taaacaagccacacatgctatgcaaatgtcatgataatgaaacaagtcacacaga |
16972393 |
T |
|
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