View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2498_low_80 (Length: 202)
Name: NF2498_low_80
Description: NF2498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2498_low_80 |
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| [»] scaffold1142 (1 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: scaffold1142 (Bit Score: 144; Significance: 6e-76; HSPs: 1)
Name: scaffold1142
Description:
Target: scaffold1142; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 907 - 1078
Alignment:
| Q |
15 |
aagggtcatagtaacagtaatggaaatctaattgcacgaactgctaaagaatttgcagcctggattgaagcagaagcagcatcaaggcatgagttgactt |
114 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
907 |
aagggtcattgtaacagtaatggaaatctaattgcacaaaccgcaaaagaatttgcagcctggattgaagcagaagcagcatcaaggcatgagttgactt |
1006 |
T |
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| Q |
115 |
cttcgcaggttcatactattctaattattcaagctaaccacacctgaatactaacattattatatttttgtg |
186 |
Q |
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| T |
1007 |
cttcgcaggttcatacgattctaattattcaagcaaaccacacctgaatactaacattattatttttttgtg |
1078 |
T |
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Target: scaffold0043 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 52486 - 52337
Alignment:
| Q |
15 |
aagggtcatagtaacagtaatggaaatctaattgcacgaactgctaaagaatttgcagcctggattgaagcagaagcagcatcaaggcatgagttgactt |
114 |
Q |
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|||||||| | ||||||||||| ||||| || ||||| || |||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |
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| T |
52486 |
aagggtcacattaacagtaatgaaaatcaaagtgcacaaatcactaaagaatttgcagcctggattgaagcggaagcagcatcaaggcacaagtcgactt |
52387 |
T |
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| Q |
115 |
cttcgcaggttcatactattctaattattcaagctaaccacacctgaata |
164 |
Q |
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|||| ||||| ||||||||||||||| | |||||||||||||||| |||| |
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| T |
52386 |
cttcacaggtccatactattctaattgtccaagctaaccacaccttaata |
52337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 27349598 - 27349747
Alignment:
| Q |
15 |
aagggtcatagtaacagtaatggaaatctaattgcacgaactgctaaagaatttgcagcctggattgaagcagaagcagcatcaaggcatgagttgactt |
114 |
Q |
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|||||||| ||||| |||||| ||||| || ||||| || ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
27349598 |
aagggtcacagtaatggtaatgaaaatcaaagtgcacaaatcactaaagaatttgcagcctggattaaagcagaagcagcatcaaggcacaagttgactt |
27349697 |
T |
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| Q |
115 |
cttcgcaggttcatactattctaattattcaagctaaccacacctgaata |
164 |
Q |
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|||| ||||| ||||||||||| ||||| |||||||||||||||| |||| |
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| T |
27349698 |
cttcacaggtccatactattcttattatccaagctaaccacaccttaata |
27349747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 27378936 - 27379085
Alignment:
| Q |
15 |
aagggtcatagtaacagtaatggaaatctaattgcacgaactgctaaagaatttgcagcctggattgaagcagaagcagcatcaaggcatgagttgactt |
114 |
Q |
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|||||||| ||||| |||||| ||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27378936 |
aagggtcacagtaatggtaatgaaaatcaaagtgcacaaatcactaaagaatttgcagcctggattgaagcagaagcagcatcaaggcacaagttgactt |
27379035 |
T |
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| Q |
115 |
cttcgcaggttcatactattctaattattcaagctaaccacacctgaata |
164 |
Q |
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| T |
27379036 |
cttcacaggtccatactattcatattatccaagctaaccacaccttaata |
27379085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 19483874 - 19483790
Alignment:
| Q |
31 |
gtaatggaaatctaattgcacgaactgctaaagaatttgcagcctggattgaagcagaagcagcatcaaggcatgagttgacttc |
115 |
Q |
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|||||| ||||| || ||||||||| |||||||||||||||| ||| ||||||| |||||||||||| |||| | ||||||||| |
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| T |
19483874 |
gtaatgaaaatcaaaatgcacgaaccactaaagaatttgcagcttgggttgaagctgaagcagcatcatggcacgcgttgacttc |
19483790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 28084146 - 28084232
Alignment:
| Q |
31 |
gtaatggaaatctaattgcacgaactgctaaagaatttgcagcctggattgaagcagaagcagcatcaaggcatgagttgacttctt |
117 |
Q |
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|||||| ||||| || ||||| ||| |||||||||||||||| ||| ||||||| ||||||||||||||||| | ||| ||||||| |
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| T |
28084146 |
gtaatgaaaatccaaatgcacaaaccactaaagaatttgcagcttgggttgaagctgaagcagcatcaaggcacgcgttcacttctt |
28084232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 11419816 - 11419879
Alignment:
| Q |
92 |
agcatcaaggcatgagttgacttcttcgcaggttcatactattctaattattcaagctaaccac |
155 |
Q |
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| T |
11419816 |
agcatcaagacacgagccgacttcttcacaggtcaatactattctatttattcaagctaaccac |
11419879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 22393954 - 22394060
Alignment:
| Q |
58 |
ctaaagaatttgcagcctggattgaagcagaagcagcatcaaggcatgagttgacttcttcgcaggttcatactattctaattattcaagctaaccacac |
157 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| || ||||| ||||||||||| ||||| |||||||||||||| |
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| T |
22393954 |
ctaaagaattttcagcctggattgaagcagaagcagcatcaaggcacaagttgacttcatcacaggtccatactattcttattatccaagctaaccacac |
22394053 |
T |
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| Q |
158 |
ctgaata |
164 |
Q |
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|| |||| |
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| T |
22394054 |
cttaata |
22394060 |
T |
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