View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2499_high_1 (Length: 813)
Name: NF2499_high_1
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 637; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 124 - 797
Target Start/End: Complemental strand, 37220623 - 37219950
Alignment:
| Q |
124 |
aatatattgagattttgaacaaaataaataaataacccgtaggaggatttgacagagtcttagtttttgttgtgattgacatataatatatgttgagttt |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| |
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| T |
37220623 |
aatatattgagattttgaacaaaataaataaataacccgtaggaggatttgacagagtcttagttattgttgtcattgaaatataatatatgttgagttt |
37220524 |
T |
|
| Q |
224 |
tttaaaagatttttggatttcataatgtttgnnnnnnnttattatatgcatggaaagcagatttcctgctgtaactgcagggtctgtaaccacagcgtgc |
323 |
Q |
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| T |
37220523 |
tttaaaagatttttggatttcataatgtttgaaaaaaattattatatgcatggaaagcagatttcctgctgtaactgcagggtctgtaaccacagggtgc |
37220424 |
T |
|
| Q |
324 |
tgtaaagtatatgagctttctgataagaattatacgatcatgatcaatttaatagttgtcaattttaatctttcgatcttaaaggaacggctgatattga |
423 |
Q |
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| T |
37220423 |
tgtaaagtatatgagctttctgataagaattatacgatcatgatcaatttaatagttgtcaattttaatctttcgatcttaaaggaacggctgatattga |
37220324 |
T |
|
| Q |
424 |
aaacggcgtgtaactgcgtgcatctgctatagcaccaaatccagggcctagatacatatgtcatgttggaaccattcctaatatagtaggtagctagagc |
523 |
Q |
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| T |
37220323 |
aaacggcgtgtaactgcgtgcatctgctatagcaccaaatccagggcctagatacatatgtcatgttggaaccattcctaatatagtaggtagctagagc |
37220224 |
T |
|
| Q |
524 |
taagtcacgactactactacactttgattctgcactagatacatatgttttaatttaaacatatcagatatcatgatcaattactataaatatgtgtgat |
623 |
Q |
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| T |
37220223 |
taagtcacgactactactacactttgattctgcactagatacatatgttttaatttaaacatatcagatatcatgatcaattactataaatatgtgtgat |
37220124 |
T |
|
| Q |
624 |
atgttttaatttaagtagataaatccaaatatgtaagtacgaaaagtttattgtttaattcctatggatgcaggttgtgtgaggacatattcgtcacctt |
723 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37220123 |
atgttttaatttaagtagataaatccaaatatgtaagtacgaaaagtttattgtttaattcctatggatgcaggttgtgtgaggacatattcgtcacctt |
37220024 |
T |
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| Q |
724 |
ggaaagggtttacaattgactttgactttagagtaaaataaagaggggaatatgtggtaattgaaaaatataat |
797 |
Q |
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| T |
37220023 |
ggaaagggtttacaattgactttgactttagagtaaaataaagaggggaatatgtggtaattgaaaaatataat |
37219950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 37220936 - 37220809
Alignment:
| Q |
11 |
atgaacattccaattataactcttaataatattaatattaaaattcatacaaaccaatcaactattannnnnnngtttaagtcaaatgtaaggacctgtg |
110 |
Q |
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| T |
37220936 |
atgaacattccaattataactcttattaatattaatattaaaattcatacaaaccaatcaactattatttttttgtttaagtcaaatgtaaggacctgtg |
37220837 |
T |
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| Q |
111 |
agtgtaccatgataatatattgagattt |
138 |
Q |
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| T |
37220836 |
agtgtaccatgataatatattgagattt |
37220809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 619 - 685
Target Start/End: Complemental strand, 37206616 - 37206552
Alignment:
| Q |
619 |
gtgatatgttttaatttaagtagataaatccaaatatgtaagtacgaaaagtttattgtttaattcc |
685 |
Q |
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| T |
37206616 |
gtgatatgttctaatttatgtagataaatccaaatatgtaagtac--aaagtttattttttaattcc |
37206552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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