View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2499_high_10 (Length: 439)
Name: NF2499_high_10
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 27888730 - 27888294
Alignment:
| Q |
1 |
ggtagaaaagacgttcatgtgagcaaagaaggttggtttgaggaaagtttggcgcgtagaattggcaatgatgagatttcttccttttgaaacaatcctt |
100 |
Q |
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| T |
27888730 |
ggtagaaaagacgttcatgtgagcaaaggaggttggtttgaggaaagtttggcgcgtagaattggcaatgatgaaatttcttccttttgaaacaatcctt |
27888631 |
T |
|
| Q |
101 |
gtctagaagaaggaattttatatttagttttctttttagccattatcttaatagtaatatttcagtagatgagatggggagttaggttgggggttgaggt |
200 |
Q |
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| T |
27888630 |
gcccagaagaaggaattttatatttagttttctttttagccattatcttaatagtaatatttcagtagatgagatggggagttaggttgggggttgaggt |
27888531 |
T |
|
| Q |
201 |
ttatacttgaaggtggagaaagaggctttttactttgaaagaggagcaagtagttgagtgttgctctttgttggacaatattcttttgcaggataatata |
300 |
Q |
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| T |
27888530 |
ttatacttgaaggtggagaaagaggctttttactttgaaagaggagtaagtagttgagtgttgctctttgctggacaatattcttttgcaggataatata |
27888431 |
T |
|
| Q |
301 |
gcgatcacatggatttggaaacacgatccacatgaaggttatctaataaaatgagtaaatcatttattgactcatgacgagcaacaagttcgtgcacctt |
400 |
Q |
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| T |
27888430 |
gcgattacatggatttggaaacacgatccacatgaaggttatctaataaaaggagtaaatcatttattgactcatgacgagcaacaagttcgtgcacctt |
27888331 |
T |
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| Q |
401 |
taacaaatattatttgcaataaatggtgcctcttaaa |
437 |
Q |
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| T |
27888330 |
taacaaatatcatttgcaataaatggtgcctcttaaa |
27888294 |
T |
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