View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2499_high_13 (Length: 380)
Name: NF2499_high_13
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 809269 - 809622
Alignment:
| Q |
18 |
cagtgtcctcccctctgctgcaatttatctggtatcctctgtttttattattgctttgctttccttaaaatggagtgactccatatttaccttttgggca |
117 |
Q |
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| T |
809269 |
cagtgtcctcccctctgctgcaatttttctggtatcctctgtttttattattgctttgctttccttaaaatggagtgactccatatttaccttttgggca |
809368 |
T |
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| Q |
118 |
tttgcatttgatttttgtacttgcaaattgcaatgaagctcttcaactgtgctattgaaaaggtcaatattagagttgatttcagtattgttatttgtta |
217 |
Q |
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| T |
809369 |
tttgcatttgatttttgtacttgcaaattgcaatgaagctcttcaactgtgctattgaaaaggtcaatattagagttgatttcagtattgttaattgtta |
809468 |
T |
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| Q |
218 |
tatgctttaggatatttctgagtatagattcatcaaacatttttatcttatgctttgttgttagctgtttattgagttcag-nnnnnnnnactcaagaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
809469 |
tatgctttaggatatttctgagtatagattcatctaacatttttatcttatgctttgttgttagctg-ttattgagttcagtttttttttactcaagaat |
809567 |
T |
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| Q |
317 |
caagctttgaaggaccttattttcctttagtctgacgaatattgtatagtataat |
371 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
809568 |
caagctttgaaggaccttattttccttttgtctgacgaatattgtatagtataat |
809622 |
T |
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