View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2499_high_16 (Length: 364)
Name: NF2499_high_16
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 6 - 348
Target Start/End: Complemental strand, 13646786 - 13646444
Alignment:
| Q |
6 |
cacagaaataagcccaaaagcaacaagaactaatagtacgaaaatgaatcaattgtattccaaactcagcagccaaatcagtagcaagatcaccaaatat |
105 |
Q |
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| T |
13646786 |
cacagaaataagcccaaaagcaacaagaactaatagtacgaaaatgaatcaattgtattccaaactcagcagccaaatcagtagcaagatcaccaaatat |
13646687 |
T |
|
| Q |
106 |
tccatccaaaataatgcaacttattttctcagacacaataatatctctcaaaaaagacttaccatacaaactgagtgacgtaattacatcacctatcctt |
205 |
Q |
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|||||||||||||||||||||||||||||| || ||||| |||||| |||| |||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13646686 |
tccatccaaaataatgcaacttattttctcggagacaattatatctttcaacaaaggcttaccatacaaactcagtgacgtaattacatcacctatcctt |
13646587 |
T |
|
| Q |
206 |
tctccaaatccaggatgcttctcttcactatgaaaatcagagatagtcttgaattgaagcttagggtaacattctaaaagagcttgaatatcatcattga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13646586 |
tctccaaatccaggatgcttctcttcactatgaaaatcagagatagtcttgaattgaagcttagggtaacattctaaaagagcttgaatatcatcattga |
13646487 |
T |
|
| Q |
306 |
attgtatgagtcggttatggatgtattcagtgttgaggaaagt |
348 |
Q |
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| T |
13646486 |
attgtatgagtcggttatggatgtatttggtgttgaggaaagt |
13646444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 13657107 - 13656770
Alignment:
| Q |
11 |
aaataagcccaaaagcaacaagaactaatagtacgaaaatgaatcaattgtattccaaactcagcagccaaatcagtagcaagatcaccaaatattccat |
110 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13657107 |
aaataagcccaaaagcaacaagcactaatagtacgaaaatgaatcaattgtatcccaaactcagcagccaaatcagtagcaagatcaccaaatattccat |
13657008 |
T |
|
| Q |
111 |
ccaaaataatgcaacttattttctcagacacaataatatctctcaaaaaagacttaccatacaaactgagtgacgtaattacatcacctatcctttctcc |
210 |
Q |
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||||||||||||||||||||||||| || ||||| |||||| |||| |||| ||||||||||||||| |||||| |||||||||||||| | ||||||| |
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| T |
13657007 |
ccaaaataatgcaacttattttctcggagacaattatatctttcaacaaaggcttaccatacaaactcagtgacaaaattacatcacctaccttttctcc |
13656908 |
T |
|
| Q |
211 |
aaatccaggatgcttctcttcactatgaaaatcagagatagtcttgaattgaagcttagggtaacattctaaaagagcttgaatatcatcattgaattgt |
310 |
Q |
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|||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13656907 |
aaatccaggatgtttctcctcactgtgaaaatcagagatggtcttgaattgaagcttagggtaacattctaaaagagcttgaatatcatcattgaattgt |
13656808 |
T |
|
| Q |
311 |
atgagtcggttatggatgtattcagtgttgaggaaagt |
348 |
Q |
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| T |
13656807 |
atgagtcggttatggatgtatttggtgttgagaaaagt |
13656770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 40 - 278
Target Start/End: Complemental strand, 13651833 - 13651595
Alignment:
| Q |
40 |
agtacgaaaatgaatcaattgtattccaaactcagcagccaaatcagtagcaagatcaccaaatattccatccaaaataatgcaacttattttctcagac |
139 |
Q |
| |
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|||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| |
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| T |
13651833 |
agtacgaaaatgtatcaactgtatcccaaattcagcagccaaatcagtagcaaggtcaccaaaacctccatctaaaataatgcaacttattttctcagag |
13651734 |
T |
|
| Q |
140 |
acaataatatctctcaaaaaagacttaccatacaaactgagtgacgtaattacatcacctatcctttctccaaatccaggatgcttctcttcactatgaa |
239 |
Q |
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|||||||| ||||||||| ||| ||||||||||| | | | || | ||||||||| | || ||||||||||||||||||||||||| | | | |||| |
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| T |
13651733 |
acaataatgtctctcaaagaaggcttaccatacatatttatggaggaaattacatctacaatgttttctccaaatccaggatgcttctccttattttgaa |
13651634 |
T |
|
| Q |
240 |
aatcagagatagtcttgaattgaagcttagggtaacatt |
278 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |
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| T |
13651633 |
aatcagagatggtcttgaattgaagcttagggtaacatt |
13651595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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