View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2499_high_17 (Length: 349)
Name: NF2499_high_17
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 32403183 - 32403507
Alignment:
| Q |
19 |
atgtgctaactgcgtgaatgcgtagaattgctcactgcatgcaaactaaattcatttccttttgcttaatggtttctttgcttataatctcaaactgaat |
118 |
Q |
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| T |
32403183 |
atgtgctaactgcgtgaatgcgtagaattgctcactgcatgcaaactaaattcatttccttttgcttaatggtttctttgcttataatctcaaactgaat |
32403282 |
T |
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| Q |
119 |
tcttgttttagaattatctctacatgatgtatgacattttcaggaagtccacgtgtggcaagcatagtcatgtcttctgctgcaagaaatttaactcctg |
218 |
Q |
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| T |
32403283 |
tcttgttctagaattatctctacatgatgtatgacattttcaggaagtccacgtgtggcaagcatagtcatgtcttctgctgcaagaaatttaactcctg |
32403382 |
T |
|
| Q |
219 |
ttactctagagctaggtggaaaatgccctgctatatttgattatccttcagactttaaggtaattcacataacggttcgtgaccgcaaattgtggtcaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32403383 |
ttactctagagctaggtggaaaatgccctgctatatttgattatccttcagactttaaggtaattcacataacggttcgtgaccgcaaattgtggtcaca |
32403482 |
T |
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| Q |
319 |
tgtcaagatttttgttgtctctgct |
343 |
Q |
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| T |
32403483 |
tgtcaagatttttgttgtctctgct |
32403507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 161 - 263
Target Start/End: Complemental strand, 6664730 - 6664628
Alignment:
| Q |
161 |
ggaagtccacgtgtggcaagcatagtcatgtcttctgctgcaagaaatttaactcctgttactctagagctaggtggaaaatgccctgctatatttgatt |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6664730 |
ggaagtccacgtgtggcaagcatagtcatgtcttctgctgcaagatatttaactcctgttactctagagctaggtggaaaatgccctgctatatttgatt |
6664631 |
T |
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| Q |
261 |
atc |
263 |
Q |
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||| |
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| T |
6664630 |
atc |
6664628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 162 - 263
Target Start/End: Complemental strand, 43304928 - 43304827
Alignment:
| Q |
162 |
gaagtccacgtgtggcaagcatagtcatgtcttctgctgcaagaaatttaactcctgttactctagagctaggtggaaaatgccctgctatatttgatta |
261 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43304928 |
gaagtccacgtgtggcaagcatagtcatgtcttttgctgcaagatatttaactcctgttactcgagagctaggtggaaaatgccctgctatatttgatta |
43304829 |
T |
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| Q |
262 |
tc |
263 |
Q |
| |
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|| |
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| T |
43304828 |
tc |
43304827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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