View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2499_high_21 (Length: 284)
Name: NF2499_high_21
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 36 - 245
Target Start/End: Complemental strand, 34727542 - 34727333
Alignment:
| Q |
36 |
gtgaggaggatattgttccttatatacctagctatctaccaagcatatgtcctcctccttctgctttcctaggctcaaaatgtgcactttgggactgttc |
135 |
Q |
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| T |
34727542 |
gtgaggaggatgctgttcctcttatatctagctatctaccaagtgtatgccctcctccttctgctttcttgggcccaaaatgtgcactttgggactgtcc |
34727443 |
T |
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| Q |
136 |
atggcccgcgcaaggattggacttgtgtcaagactattgcagtagttttcatgcttctctagctttaaatgaaggacaaccaggcatagccccagttcta |
235 |
Q |
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| T |
34727442 |
aagacccgcacaagggttggactggtgtcaagactattgtagtagctttcatgccgctctagctttgaatgaagggccaccaggcatggccccagttcta |
34727343 |
T |
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| Q |
236 |
cgacctgggg |
245 |
Q |
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| T |
34727342 |
cgacccgggg |
34727333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 30591836 - 30591884
Alignment:
| Q |
86 |
cctcctccttctgctttcctaggctcaaaatgtgcactttgggactgtt |
134 |
Q |
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| T |
30591836 |
cctccaccttctgctttcctagccccaaaatgtgcactgtgggactgtt |
30591884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 4327687 - 4327765
Alignment:
| Q |
146 |
caaggattggacttgtgtcaagactattgcagtagttttcatgcttctctagctttaaatgaaggacaaccaggcatag |
224 |
Q |
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| T |
4327687 |
caaggattggacttgtgtcaagactattgcagtagttttcatgcttctctagctttaaatgaaggacaaccaggcatag |
4327765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 4327613 - 4327690
Alignment:
| Q |
1 |
caactgttatactgctgttagaggcacaggctttagtgaggaggatattgttccttatatacctagctatctaccaag |
78 |
Q |
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| T |
4327613 |
caactgttatactgcttttagaggcacaggctttagtgaggaggatgttgttccttatatacctagctatctaccaag |
4327690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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