View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2499_high_24 (Length: 273)
Name: NF2499_high_24
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_high_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 36323059 - 36323313
Alignment:
| Q |
18 |
attttaagcttaggagaaggttgacctccccnnnnnnnggacccttgggagaagcaacatggacaaacattgttaacaaaaaacaaaactcatgtgtgta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36323059 |
attttaagcttaggagaaggttgacctccccaaaaaaaggacccttgggagaagcaacatggacaaacattgttaacaaaaaacaaaattcatgtgtgta |
36323158 |
T |
|
| Q |
118 |
tgtgtagctaaagattaatggcaaacctcggttaaaatatgcatatcattttcataatttgttatacgaatatgtgtaaattttttctaaagatcgagcg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36323159 |
tgtgtagctaaagattaatggcaaacctcggtttaaacatgcatatcattttcataatttgtaatacgaatatgtgtaaattttttctaaagatcgagcg |
36323258 |
T |
|
| Q |
218 |
agccattgtagttaactaatgattctgtaaatgcatatgaa-acaaattttcctc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
36323259 |
agccattgtagttaactaatgattctgtaaatgcatatgaataaaaattttcctc |
36323313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University