View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2499_high_26 (Length: 269)
Name: NF2499_high_26
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 36323300 - 36323558
Alignment:
| Q |
1 |
taaaaattttcctcaaatacctgaccgcaaaatattttaaattctttagcctatttaaaacttatcaattacaagtaatgtaatgaagtctatatattgt |
100 |
Q |
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| T |
36323300 |
taaaaattttcctcaaatacctgaccgcaaaatattttaaattctttagcctatttaaaacttatcaattacaagtaatgtaatgaagtctatatattgt |
36323399 |
T |
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| Q |
101 |
gaattatgttgcagggactggcgttactcacggtacaagcacattaccctaacctaaaaccagccatatgcaacctctatgacaaaaatgcagtgtgtga |
200 |
Q |
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| T |
36323400 |
gaattatgttgcagggactggcgttactcacagtacaagcacattaccctaacctaaaaccagccatatgcaacctctatgacaaaaatgcagtgtgtga |
36323499 |
T |
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| Q |
201 |
aaaaattagtggcaaccatgaagcttttctcttgattggtctctacttgttggcctttg |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36323500 |
aaaaattagtggcaaccatgaagcttttctcttgattggtctctacttgttggcctttg |
36323558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 95 - 259
Target Start/End: Original strand, 36330240 - 36330404
Alignment:
| Q |
95 |
tattgtgaattatgttgcagggactggcgttactcacggtacaagcacattaccctaacctaaaaccagccatatgcaacctctatgacaaaaatgcagt |
194 |
Q |
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||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| | ||||||||||||||| |
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| T |
36330240 |
tattgtgaactatgctgcagggactggcgttactcacagtacaagcacattaccctaatctgaaaccagccatatgcaacttacttgacaaaaatgcagt |
36330339 |
T |
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| Q |
195 |
gtgtgaaaaaattagtggcaaccatgaagcttttctcttgattggtctctacttgttggcctttg |
259 |
Q |
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| T |
36330340 |
gtgtgaaaaaattaatggcaaccatgaagcttttctcttcattagtctatacttgttggcctttg |
36330404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 37919830 - 37919906
Alignment:
| Q |
183 |
caaaaatgcagtgtgtgaaaaaattagtggcaaccatgaagcttttctcttgattggtctctacttgttggcctttg |
259 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||| |
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| T |
37919830 |
caaaaatgcagtgcgtgaaaaaattagtggcaaccatgaagcttttctcttcattagtctatacgtgttggcctttg |
37919906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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