View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2499_high_29 (Length: 249)
Name: NF2499_high_29
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_high_29 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 49438214 - 49438452
Alignment:
| Q |
18 |
catcaaaacttcgatacatctaaaaacaagtaaacaacatagaaatatataccatca-------gaaataaggtcaacattttcnnnnnnnnnnnnnnnn |
110 |
Q |
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| T |
49438214 |
catcaaaacttcgatacatctaaaaacaagtaaacaacatagaaatatataccatcactcatcagaaataaggtcaacattttcaaaagaaaagcaaaaa |
49438313 |
T |
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| Q |
111 |
nnnnntcaacacatttcaccatcagtgtattcatatagcaataataaatttcaaaccttatttagttctatgtgcagtttctccacattatgaagtgctt |
210 |
Q |
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| T |
49438314 |
caaaatcaacacatttcaccatcagtgtattcatatagcaataataaatttcaaaccttatttagttctatgtgcagtttctccacattatgaagtgctt |
49438413 |
T |
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| Q |
211 |
tcaacggaaaatgacaataagtgtaaggcattactgctt |
249 |
Q |
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| T |
49438414 |
tcaacggaaaatgacaataagtgtaaggcatttctgctt |
49438452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 49415481 - 49415378
Alignment:
| Q |
138 |
tattcatatagcaataataaatttcaaaccttatttagttctatgtgcagtttctccacattatgaagtgctttcaacggaaaatgacaataagtgtaag |
237 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||||||||||||| |||||||||||| ||||| ||| |
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| T |
49415481 |
tattcatatagcaataataaatttcaaacctgatttatttctatgtacagttccttcacattatgaagtgctttcaatggaaaatgacaaaaagtggaag |
49415382 |
T |
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| Q |
238 |
gcat |
241 |
Q |
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|||| |
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| T |
49415381 |
gcat |
49415378 |
T |
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