View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2499_high_5 (Length: 513)
Name: NF2499_high_5
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 285 - 498
Target Start/End: Original strand, 52064963 - 52065194
Alignment:
| Q |
285 |
aaggtataccagtgattcttttggagaagtgataccaccaatcagaa------gggtgatgc------------aatggaaatggggtggttgcaatggc |
366 |
Q |
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| T |
52064963 |
aaggtataccagtgattcttttggagaagtgataccaccaatcagaatcagaagggtgatgaggctgagagtagaatggaaatggggtggttgcaatggc |
52065062 |
T |
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| Q |
367 |
atctttgttattgttgtcacttttctttctcttcttcactcctctgatggaacccattaacaacaacaataagaaacagggaagataacctataaatcaa |
466 |
Q |
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| T |
52065063 |
atctttgttatcgttgtcacttttctttctcttcttcactcctctgatggaacccattaacaacaaaaataagaaacagggaagataacctataaatcaa |
52065162 |
T |
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| Q |
467 |
aagtttagggaagtaattaaaagtgatatgat |
498 |
Q |
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| T |
52065163 |
aagtttagggaagtaattaaaagtgatatgat |
52065194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 52064810 - 52064882
Alignment:
| Q |
136 |
aacctatgcaatataaacacatttaggtcaaataatgagattacattcataatggagtaacaaagcaagattt |
208 |
Q |
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| T |
52064810 |
aacctatgcaatataaacacatttaggtcaaataatgagattacattcataatggagtaacaaagcaagattt |
52064882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 52064675 - 52064740
Alignment:
| Q |
1 |
accgcacatgacacttacaatctaaaaatttggaaaaatgaattaaataaaagagatagacgtgaa |
66 |
Q |
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| T |
52064675 |
accgcacacgacacttacaatgtaaaaatttggaaaaatgaattaaataaaagagatacacgtgaa |
52064740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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