View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2499_high_8 (Length: 462)
Name: NF2499_high_8
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_high_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Complemental strand, 6315768 - 6315324
Alignment:
| Q |
19 |
aattcttcctttgcaaaagataacaatctaatgacagttctagtatggaagtggtggatattcattgcgcttttcaaattttggttaccttgcaaacata |
118 |
Q |
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| T |
6315768 |
aattcttcctttgcaaaagataacaatctaatgacagttctagtatggaagtggtggatattcattgcgcttttcaaattttggttaccttgcaaacata |
6315669 |
T |
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| Q |
119 |
aacgtttatttaaagtaacaaatccatatcatttcttcaataatcaaaggaattttgtgactagcagtaaatgagatacttttgctaacggatgagcaac |
218 |
Q |
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| T |
6315668 |
aacgtttatttaaagtaacaaatccatatcatttcttcaataatcaaaggaattttgtgactagcagtaaatgagatacttttgctaacggatgagcaac |
6315569 |
T |
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| Q |
219 |
ttgattggcttgcatccttataaaattaacccttaagtttggttttacattaatacggcctctccattttgaaatcatggatctaaactcagttatagcc |
318 |
Q |
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| T |
6315568 |
ttgattggcttgcatccttataaaattaacccttaagtttggttttacattaatacggcctctccattttgaaatcatggatctaaactcagttatagcc |
6315469 |
T |
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| Q |
319 |
aaaaactatgagccattgtattaacaaccaatttgcagtcagtcacaattgtccccgtactatttgctcactccataaccctccataaagccatcacttc |
418 |
Q |
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| T |
6315468 |
aaaaactatgagccattgtattaacaaccaatttgcagtcagtcacaattgtccccgtactatttgctcactccataaccctccataaagccgtcacttc |
6315369 |
T |
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| Q |
419 |
atcttcatttgtaaagggat-ccatctgcccaacaagtctccgtt |
462 |
Q |
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| T |
6315368 |
atcttcatttgtaaagggatcccatctgcccaacaagtctccgtt |
6315324 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 55322887 - 55322830
Alignment:
| Q |
192 |
agatacttttgctaacggatgagcaacttgattggcttgcatccttataaaattaacc |
249 |
Q |
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| T |
55322887 |
agatactttttctaatgaatgagcaacttgtttgacttgtctccttataaaattaacc |
55322830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 26352201 - 26352137
Alignment:
| Q |
236 |
ttataaaattaacccttaagtttggttttacattaatacggcctctccattttgaaatcatggat |
300 |
Q |
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| T |
26352201 |
ttataaaattaaccctccagctgggttttacattaatatagtctctacattttaaaatcatggat |
26352137 |
T |
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