View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2499_high_9 (Length: 444)

Name: NF2499_high_9
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2499_high_9
NF2499_high_9
[»] chr4 (8 HSPs)
chr4 (268-439)||(22523633-22523804)
chr4 (16-195)||(22523877-22524056)
chr4 (31-165)||(13404585-13404719)
chr4 (268-314)||(22471352-22471398)
chr4 (328-366)||(23580056-23580094)
chr4 (268-324)||(25497624-25497680)
chr4 (276-324)||(4071946-4071994)
chr4 (268-324)||(50298584-50298639)
[»] chr1 (5 HSPs)
chr1 (275-324)||(49692005-49692054)
chr1 (268-322)||(43371837-43371891)
chr1 (277-322)||(48536645-48536690)
chr1 (284-324)||(6557041-6557081)
chr1 (268-324)||(51929408-51929464)
[»] chr5 (3 HSPs)
chr5 (268-317)||(37968952-37969001)
chr5 (284-324)||(11064735-11064775)
chr5 (341-369)||(31694545-31694573)
[»] chr3 (8 HSPs)
chr3 (268-324)||(3776336-3776392)
chr3 (276-324)||(25258840-25258888)
chr3 (272-323)||(28283549-28283600)
chr3 (282-324)||(44014758-44014800)
chr3 (268-324)||(21872241-21872297)
chr3 (268-300)||(22667495-22667527)
chr3 (268-300)||(22724134-22724166)
chr3 (368-396)||(43038764-43038792)
[»] chr2 (4 HSPs)
chr2 (268-324)||(40158786-40158842)
chr2 (276-322)||(32837393-32837439)
chr2 (268-324)||(787400-787456)
chr2 (268-324)||(4350758-4350814)
[»] chr8 (8 HSPs)
chr8 (268-299)||(25881361-25881392)
chr8 (268-314)||(2487954-2488000)
chr8 (268-298)||(8536001-8536031)
chr8 (282-324)||(16162828-16162870)
chr8 (271-320)||(21130684-21130733)
chr8 (276-324)||(9836805-9836853)
chr8 (305-368)||(11000552-11000618)
chr8 (268-320)||(11376775-11376827)
[»] chr6 (3 HSPs)
chr6 (278-321)||(20351219-20351262)
chr6 (272-324)||(32171333-32171385)
chr6 (342-374)||(35070483-35070515)
[»] scaffold0311 (1 HSPs)
scaffold0311 (269-299)||(10564-10594)
[»] scaffold0024 (1 HSPs)
scaffold0024 (268-324)||(27644-27700)
[»] chr7 (3 HSPs)
chr7 (268-324)||(3836629-3836685)
chr7 (272-324)||(25670536-25670588)
chr7 (268-312)||(25907583-25907627)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 268 - 439
Target Start/End: Complemental strand, 22523804 - 22523633
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttgagtcaacttatgaaaatagcttatgagttatgatatgttcatttgttttcaacttattttcataagctc 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22523804 ctactgacataagtacttgtgagactgtttgagtcaacttatgaaaatagcttatgagttatgatatgttcatttgttttcaacttattttcataagctc 22523705  T
Q  368 taaaacaacttatagcttatatgaaatagctcagccttatacataacgattatcatgataattgcctatgct 439  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  22523704 taaaacaacttatagcttatatgaaatagcccagccttatacataacgattatcatgataatttcctatgct 22523633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 22524056 - 22523877
Alignment:
Q  16 cacatacgagtctagttcttctagggtttcgccatctctggaagcaggaatcatnnnnnnncttcggttagagaattttatgtgccattcgaatcacgaa 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  22524056 cacatacgagtctagttcttcaagggtttcgccatctctggaagcaggaatcatcaaaaaacttcggttagagaattttatgtgccattcgaatcacgaa 22523957  T
Q  116 actcaattcggaagcaacgttaatctcatcactggccaaaatggaagtataatctcttttccctcattaatctcattcac 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22523956 actcaattcggaagcaacgttaatctcatcactggccaaaatggaagtataatctctttttcctcattaatctcattcac 22523877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 165
Target Start/End: Original strand, 13404585 - 13404719
Alignment:
Q  31 ttcttctagggtttcgccatctctggaagcaggaatcatnnnnnnncttcggttagagaattttatgtgccattcgaatcacgaaactcaattcggaagc 130  Q
    |||||||  |||||||||   ||||||||| ||||||||       |||||||| |||||||| ||||||||||| ||||| |||||| | || || ||     
T  13404585 ttcttcttcggtttcgccgagtctggaagcgggaatcatcaagaagcttcggttggagaatttcatgtgccattccaatcatgaaactgagtttgggagt 13404684  T
Q  131 aacgttaatctcatcactggccaaaatggaagtat 165  Q
     ||||||||||||||||||| ||||||||||||||    
T  13404685 cacgttaatctcatcactggtcaaaatggaagtat 13404719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 22471398 - 22471352
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttgagtcaacttatgaaaa 314  Q
    ||||||||||||| ||||||||||||||||| |  ||||||||||||    
T  22471398 ctactgacataagcacttgtgagactgtttgggagaacttatgaaaa 22471352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 366
Target Start/End: Original strand, 23580056 - 23580094
Alignment:
Q  328 atgatatgttcatttgttttcaacttattttcataagct 366  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  23580056 atgatatgttcatttgcattcaacttattttcataagct 23580094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 25497680 - 25497624
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttgagtcaa-cttatgaaaatagcttatga 324  Q
    ||||||||||||||||||||||||| ||||| || || |||||||||||| |||||||    
T  25497680 ctactgacataagtacttgtgagacagtttg-gtaaagcttatgaaaatatcttatga 25497624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 4071994 - 4071946
Alignment:
Q  276 ataagtacttgtgagactgtttgagtcaacttatgaaaatagcttatga 324  Q
    ||||| |||||||||||||||||||  | |||||||||| |||||||||    
T  4071994 ataagcacttgtgagactgtttgagagagcttatgaaaacagcttatga 4071946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 50298639 - 50298584
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttgagtcaacttatgaaaatagcttatga 324  Q
    ||||||||||||| |||||||||||||||||    ||||||| ||||||||||||||    
T  50298639 ctactgacataagcacttgtgagactgtttggaaaaacttat-aaaatagcttatga 50298584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 49692005 - 49692054
Alignment:
Q  275 cataagtacttgtgagactgtttgagtcaacttatgaaaatagcttatga 324  Q
    |||||| |||||||||||||||||||  ||||||||||||||||||||||    
T  49692005 cataagaacttgtgagactgtttgagagaacttatgaaaatagcttatga 49692054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 322
Target Start/End: Original strand, 43371837 - 43371891
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttgagtcaacttatgaaaatagcttat 322  Q
    |||||| |||||| |||||||||||||||||||  | |||||||||| |||||||    
T  43371837 ctactggcataagcacttgtgagactgtttgagagagcttatgaaaacagcttat 43371891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 48536645 - 48536690
Alignment:
Q  277 taagtacttgtgagactgtttgagtcaacttatgaaaatagcttat 322  Q
    ||||||| |||||||||||||| |  ||||||||||||||||||||    
T  48536645 taagtacatgtgagactgtttgggagaacttatgaaaatagcttat 48536690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 6557081 - 6557041
Alignment:
Q  284 ttgtgagactgtttgagtcaacttatgaaaatagcttatga 324  Q
    |||||||||| ||||||  ||||||||||||||||||||||    
T  6557081 ttgtgagactatttgagagaacttatgaaaatagcttatga 6557041  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 51929408 - 51929464
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttgagtcaacttatgaaaatagcttatga 324  Q
    ||||||||||||| || ||||| ||||||| ||  |||||||||||| |||||||||    
T  51929408 ctactgacataagcacctgtgacactgtttaagagaacttatgaaaacagcttatga 51929464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 37969001 - 37968952
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttgagtcaacttatgaaaatag 317  Q
    |||||||||||||||||||||| ||||||||||  | |||||||||||||    
T  37969001 ctactgacataagtacttgtgaaactgtttgagagatcttatgaaaatag 37968952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 11064775 - 11064735
Alignment:
Q  284 ttgtgagactgtttgagtcaacttatgaaaatagcttatga 324  Q
    |||||||| ||||||||  ||||||||||||||||||||||    
T  11064775 ttgtgagattgtttgagagaacttatgaaaatagcttatga 11064735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 369
Target Start/End: Complemental strand, 31694573 - 31694545
Alignment:
Q  341 ttgttttcaacttattttcataagctcta 369  Q
    |||||||||||||||||||||||||||||    
T  31694573 ttgttttcaacttattttcataagctcta 31694545  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 3776336 - 3776392
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttgagtcaacttatgaaaatagcttatga 324  Q
    |||||| |||||||| |||||||| ||||||||  |||||||||||| |||||||||    
T  3776336 ctactggcataagtaattgtgagaatgtttgagagaacttatgaaaacagcttatga 3776392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 25258888 - 25258840
Alignment:
Q  276 ataagtacttgtgagactgtttgagtcaacttatgaaaatagcttatga 324  Q
    |||||||||||||||||| ||||||| |||||||||||| || ||||||    
T  25258888 ataagtacttgtgagactttttgagtgaacttatgaaaagagtttatga 25258840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 28283549 - 28283600
Alignment:
Q  272 tgacataagtacttgtgagactgtttgagtcaacttatgaaaatagcttatg 323  Q
    |||||| || ||||||||||||||||||   |||||||||||||||||||||    
T  28283549 tgacattagcacttgtgagactgtttgaaagaacttatgaaaatagcttatg 28283600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 324
Target Start/End: Original strand, 44014758 - 44014800
Alignment:
Q  282 acttgtgagactgtttgagtcaacttatgaaaatagcttatga 324  Q
    |||||||||||||||||||  |||||||||||| |||||||||    
T  44014758 acttgtgagactgtttgagaaaacttatgaaaacagcttatga 44014800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 21872241 - 21872297
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttgagtcaacttatgaaaatagcttatga 324  Q
    ||||||||||||| |||||||||||||||||    | ||| ||||||||||||||||    
T  21872241 ctactgacataagcacttgtgagactgtttggaaaagcttttgaaaatagcttatga 21872297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 22667527 - 22667495
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttgag 300  Q
    ||||||||||||| |||||||||||||||||||    
T  22667527 ctactgacataagcacttgtgagactgtttgag 22667495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 22724166 - 22724134
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttgag 300  Q
    ||||||||||||| |||||||||||||||||||    
T  22724166 ctactgacataagcacttgtgagactgtttgag 22724134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 396
Target Start/End: Original strand, 43038764 - 43038792
Alignment:
Q  368 taaaacaacttatagcttatatgaaatag 396  Q
    |||||||||||||||||||||||||||||    
T  43038764 taaaacaacttatagcttatatgaaatag 43038792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 40158842 - 40158786
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttgagtcaacttatgaaaatagcttatga 324  Q
    ||||||||||||| ||||||||||||| ||| |  |||||||||||| |||||||||    
T  40158842 ctactgacataagaacttgtgagactgattgggggaacttatgaaaacagcttatga 40158786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 322
Target Start/End: Complemental strand, 32837439 - 32837393
Alignment:
Q  276 ataagtacttgtgagactgtttgagtcaacttatgaaaatagcttat 322  Q
    ||||||||||||||||||||||| |  |||||||||||| |||||||    
T  32837439 ataagtacttgtgagactgtttgggagaacttatgaaaacagcttat 32837393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 787456 - 787400
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttgagtcaacttatgaaaatagcttatga 324  Q
    |||||| |||||| |||||||| |||||||| |  |||||||||||| |||||||||    
T  787456 ctactggcataagcacttgtgacactgtttgtgagaacttatgaaaacagcttatga 787400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 4350814 - 4350758
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttgagtcaacttatgaaaatagcttatga 324  Q
    ||||||||||||| ||||  |||| ||||||||  |||||||||||| |||||||||    
T  4350814 ctactgacataagcacttaagagattgtttgagagaacttatgaaaacagcttatga 4350758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 299
Target Start/End: Original strand, 25881361 - 25881392
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttga 299  Q
    ||||||||||||||||||||||||||||||||    
T  25881361 ctactgacataagtacttgtgagactgtttga 25881392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 2487954 - 2488000
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttgagtcaacttatgaaaa 314  Q
    ||||||||||||| ||||||||||||||||| |  ||||||||||||    
T  2487954 ctactgacataagcacttgtgagactgtttgggagaacttatgaaaa 2488000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 298
Target Start/End: Original strand, 8536001 - 8536031
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttg 298  Q
    |||||||||||||||||||||||||||||||    
T  8536001 ctactgacataagtacttgtgagactgtttg 8536031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 324
Target Start/End: Complemental strand, 16162870 - 16162828
Alignment:
Q  282 acttgtgagactgtttgagtcaacttatgaaaatagcttatga 324  Q
    |||||||||||||||||||  |||||||||||| |||||||||    
T  16162870 acttgtgagactgtttgagaaaacttatgaaaacagcttatga 16162828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 21130733 - 21130684
Alignment:
Q  271 ctgacataagtacttgtgagactgtttgagtcaacttatgaaaatagctt 320  Q
    ||||||||| ||||||||||||||||||||  | |||||| |||||||||    
T  21130733 ctgacataaatacttgtgagactgtttgagagagcttatggaaatagctt 21130684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 9836805 - 9836853
Alignment:
Q  276 ataagtacttgtgagactgtttgagtcaacttatgaaaatagcttatga 324  Q
    ||||| |||||||||| |||||||| ||||||||  |||||||||||||    
T  9836805 ataagcacttgtgagattgtttgagacaacttatagaaatagcttatga 9836853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 11000552 - 11000618
Alignment:
Q  305 cttatgaaaatagcttatgagttatgatatgttcat---ttgttttcaacttattttcataagctct 368  Q
    ||||||||||| |||||||||||||||  |||||||   |||| |||| ||||||| ||||||||||    
T  11000552 cttatgaaaatcgcttatgagttatgacttgttcataagttgtcttcagcttatttccataagctct 11000618  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 11376827 - 11376775
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttgagtcaacttatgaaaatagctt 320  Q
    ||||||| |||||| ||||||||||| |||| |  ||||||||||||||||||    
T  11376827 ctactgatataagttcttgtgagactatttgggagaacttatgaaaatagctt 11376775  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 20351262 - 20351219
Alignment:
Q  278 aagtacttgtgagactgtttgagtcaacttatgaaaatagctta 321  Q
    ||||||||||||||||||||| | || |||||||||||||||||    
T  20351262 aagtacttgtgagactgtttgggacagcttatgaaaatagctta 20351219  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 32171333 - 32171385
Alignment:
Q  272 tgacataagtacttgtgagactgtttgagtcaacttatgaaaatagcttatga 324  Q
    ||||||||| ||||| |||||||||||||  | |||||||||| |||||||||    
T  32171333 tgacataagcacttgcgagactgtttgagagagcttatgaaaacagcttatga 32171385  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 374
Target Start/End: Original strand, 35070483 - 35070515
Alignment:
Q  342 tgttttcaacttattttcataagctctaaaaca 374  Q
    ||||||||||||||||||||||||||| |||||    
T  35070483 tgttttcaacttattttcataagctctcaaaca 35070515  T

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Target: scaffold0311 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 10564 - 10594
Alignment:
Q  269 tactgacataagtacttgtgagactgtttga 299  Q
    |||||||||||||||||||||||||||||||    
T  10564 tactgacataagtacttgtgagactgtttga 10594  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 27700 - 27644
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttgagtcaacttatgaaaatagcttatga 324  Q
    ||||||||||| |||||| |||||||||||| |  | |||||| |||||||||||||    
T  27700 ctactgacatatgtacttctgagactgtttgggagagcttatggaaatagcttatga 27644  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 3836629 - 3836685
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttgagtcaacttatgaaaatagcttatga 324  Q
    |||||| | |||| |||||||| |||||||| |  ||||||||||||||||||||||    
T  3836629 ctactggcttaagcacttgtgaaactgtttgggagaacttatgaaaatagcttatga 3836685  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 25670536 - 25670588
Alignment:
Q  272 tgacataagtacttgtgagactgtttgagtcaacttatgaaaatagcttatga 324  Q
    |||||||||  ||||||||||||||||||  |||||||||||| | |||||||    
T  25670536 tgacataagctcttgtgagactgtttgagaaaacttatgaaaacaacttatga 25670588  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 25907583 - 25907627
Alignment:
Q  268 ctactgacataagtacttgtgagactgtttgagtcaacttatgaa 312  Q
    ||||||||||||| |||||||||||||||| | | ||||||||||    
T  25907583 ctactgacataagcacttgtgagactgtttcactgaacttatgaa 25907627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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