View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2499_low_11 (Length: 419)

Name: NF2499_low_11
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2499_low_11
NF2499_low_11
[»] chr1 (5 HSPs)
chr1 (1-400)||(25244147-25244554)
chr1 (3-63)||(2537344-2537404)
chr1 (3-45)||(8395344-8395386)
chr1 (12-66)||(41041988-41042042)
chr1 (20-58)||(47827737-47827775)
[»] chr4 (1 HSPs)
chr4 (13-62)||(4927237-4927286)
[»] chr6 (1 HSPs)
chr6 (13-58)||(30349798-30349843)
[»] chr2 (2 HSPs)
chr2 (13-64)||(7098468-7098519)
chr2 (15-60)||(10574312-10574357)
[»] chr5 (2 HSPs)
chr5 (2-64)||(18436140-18436202)
chr5 (18-56)||(42148781-42148819)
[»] chr7 (1 HSPs)
chr7 (3-55)||(379355-379407)


Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 25244554 - 25244147
Alignment:
Q  1 agtatttatacaatatctggggggagccatggctaccatgggctcctatgaagatccgccactgaatctacacatatatgtcccttgaggacaactatcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| |||||    
T  25244554 agtatttatacaatatctggggggagccatggctaccatgggctcccatgaagatccgccactaaatctacacacatatgtcccttgaggacaagtatcc 25244455  T
Q  101 atgtttttatggtatagaatctttaggtggttggggtggttttaggttcttccgggggtttggtgggtatgatgtctagtttttaggggatgggttatat 200  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||    
T  25244454 atgtttgtttggtatagaatctttaggtggttggggtggttttaggttcttccgggggtttggtgggtataatgtctagtttttatgggttgggttatat 25244355  T
Q  201 gcatcgcgttaagttaggtttggcctttgtttgacaa--------ttggtccatccaaagagcttagaacgaccttatattttatgggaaaacatcctct 292  Q
    |||| |||||||||||||||||||||| |||||||||        |||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  25244354 gcattgcgttaagttaggtttggccttcgtttgacaatatgttgtttggtccatccaaagagcttagaacgacctcatattttatggggaaacatcctct 25244255  T
Q  293 tttgtagtagggtcctaccctagtttcacaccccatttggggagtcttcacttttcagtactttgcaggttatcaggtgcttagtcattggaggttcctt 392  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||| ||    
T  25244254 tttgtagtagggtcctaccctaatttcacaccccatttggggagtcttcacttttcaatactttgcaggttgtcaggtgtttagtcattggaggttcatt 25244155  T
Q  393 gggagtgg 400  Q
    ||||||||    
T  25244154 gggagtgg 25244147  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 2537344 - 2537404
Alignment:
Q  3 tatttatacaatatctggggggagccatggctaccatgggctcctatgaagatccgccact 63  Q
    |||||||| ||||| || ||||||||| |||||||||||||||| ||||||||| ||||||    
T  2537344 tatttataaaatatatgtggggagccaaggctaccatgggctcccatgaagatctgccact 2537404  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 8395386 - 8395344
Alignment:
Q  3 tatttatacaatatctggggggagccatggctaccatgggctc 45  Q
    ||||||||| | ||||||||||||||||||||| |||||||||    
T  8395386 tatttatactaaatctggggggagccatggctatcatgggctc 8395344  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 41042042 - 41041988
Alignment:
Q  12 aatatctggggggagccatggctaccatgggctcctatgaagatccgccactgaa 66  Q
    ||||| ||||||||||||||||||||||||||||    |||||||||||| ||||    
T  41042042 aatatatggggggagccatggctaccatgggctctagagaagatccgccaatgaa 41041988  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 47827775 - 47827737
Alignment:
Q  20 gggggagccatggctaccatgggctcctatgaagatccg 58  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  47827775 gggggagccatgactaccatggcctcctatgaagatccg 47827737  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 4927286 - 4927237
Alignment:
Q  13 atatctggggggagccatggctaccatgggctcctatgaagatccgccac 62  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||    
T  4927286 atatctggggggagccatggctaccatgggctcccattaagatccgccac 4927237  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 30349843 - 30349798
Alignment:
Q  13 atatctggggggagccatggctaccatgggctcctatgaagatccg 58  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||    
T  30349843 atatatggggggagccatggctaccatgggctcccatgaagatccg 30349798  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 7098468 - 7098519
Alignment:
Q  13 atatctggggggagccatggctaccatgggctcctatgaagatccgccactg 64  Q
    |||||||||||||||||||| ||||||||||||| ||| |||||| ||||||    
T  7098468 atatctggggggagccatggataccatgggctcccatggagatccaccactg 7098519  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 10574312 - 10574357
Alignment:
Q  15 atctggggggagccatggctaccatgggctcctatgaagatccgcc 60  Q
    |||| ||||||||||||||||||||||||||| | |||||||||||    
T  10574312 atctagggggagccatggctaccatgggctcccaagaagatccgcc 10574357  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 18436202 - 18436140
Alignment:
Q  2 gtatttatacaatatctggggggagccatggctaccatgggctcctatgaagatccgccactg 64  Q
    ||||| |||| | |||| ||||||||||||||||||||| ||||| | |||||||| ||||||    
T  18436202 gtattaatactaaatcttgggggagccatggctaccatgagctcccaagaagatccaccactg 18436140  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 42148781 - 42148819
Alignment:
Q  18 tggggggagccatggctaccatgggctcctatgaagatc 56  Q
    |||||||||||||||||||||||||||| || |||||||    
T  42148781 tggggggagccatggctaccatgggctcttaagaagatc 42148819  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 379355 - 379407
Alignment:
Q  3 tatttatacaatatctggggggagccatggctaccatgggctcctatgaagat 55  Q
    |||| |||| |||| ||||||||||||||| |||||||| |||||| ||||||    
T  379355 tattaataccatatttggggggagccatggttaccatggactcctaagaagat 379407  T

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