View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2499_low_12 (Length: 381)

Name: NF2499_low_12
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2499_low_12
NF2499_low_12
[»] chr1 (3 HSPs)
chr1 (19-379)||(15587823-15588190)
chr1 (300-337)||(26070937-26070974)
chr1 (311-343)||(25694424-25694456)
[»] chr5 (2 HSPs)
chr5 (300-339)||(27488459-27488498)
chr5 (300-337)||(13789730-13789767)
[»] chr7 (1 HSPs)
chr7 (309-338)||(44682563-44682592)
[»] chr3 (2 HSPs)
chr3 (300-337)||(53441905-53441942)
chr3 (309-337)||(12747819-12747847)
[»] chr2 (16 HSPs)
chr2 (304-337)||(5109361-5109394)
chr2 (300-337)||(40430779-40430816)
chr2 (300-341)||(45571142-45571183)
chr2 (300-341)||(45574809-45574850)
chr2 (300-341)||(45578476-45578517)
chr2 (300-341)||(45582143-45582184)
chr2 (300-341)||(45585810-45585851)
chr2 (300-341)||(45589477-45589518)
chr2 (300-341)||(45593144-45593185)
chr2 (300-341)||(45596811-45596852)
chr2 (300-341)||(45600478-45600519)
chr2 (300-341)||(45604145-45604186)
chr2 (300-341)||(45607812-45607853)
chr2 (300-341)||(45611479-45611520)
chr2 (300-341)||(45615146-45615187)
chr2 (301-337)||(11794563-11794599)
[»] chr8 (1 HSPs)
chr8 (309-337)||(8793841-8793869)
[»] chr4 (1 HSPs)
chr4 (309-337)||(17236891-17236919)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 15588190 - 15587823
Alignment:
Q  19 tgtggagcatcaggcggcactgaatcagagccacgacgatgtctcctgtgtcgtgaaccggctgaagaatcatgggtcgaggagtctgcagttgggtctg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15588190 tgtggagcatcaggcggcactgaatcagagccacgacgatgtctcctgtgtcgtgaaccggctgaagaatcatgggtcgaggagtctgcagttgggtctg 15588091  T
Q  119 atgatcgctgttggcgtcgtgtgttcttcttagttgtggtgttggtttcgttgtcgattgattcatgtcttgattttggtattagatgtcgaatcttgga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15588090 atgatcgctgttggcgtcgtgtgttcttcttagttgtggtgttggtttcgttgtcgattgattcatgtcttgattttggtattagatgtcgaatcttgga 15587991  T
Q  219 cgatttttcttttggttttgatgatttgcttttacgctctac--------nnnnnnnnnnnntagtttttaagaagagacgatattgatagtaaactgtt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||| || || | | |||||||| |||    
T  15587990 cgatttttcttttggttttgatgatttgcttttacgctctacaaaaacaaaaacaaaaaaaatagtttttaagaagaaac-atgtcggtagtaaaccgtt 15587892  T
Q  311 tcttataaataggaccggagagagtatatgcaaaccttctggtggctgggtaggtttctctgctcctcc 379  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||    
T  15587891 tcttataaataggaccggaggcagtatatgcaaaccttctgttggctgggtaggtttctctgctcctcc 15587823  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 26070937 - 26070974
Alignment:
Q  300 agtaaactgtttcttataaataggaccggagagagtat 337  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  26070937 agtaaaatgtttcttataaataagaccggagagagtat 26070974  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 25694424 - 25694456
Alignment:
Q  311 tcttataaataggaccggagagagtatatgcaa 343  Q
    |||||||||||||||||||| ||||||||||||    
T  25694424 tcttataaataggaccggagggagtatatgcaa 25694456  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Original strand, 27488459 - 27488498
Alignment:
Q  300 agtaaactgtttcttataaataggaccggagagagtatat 339  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  27488459 agtaaattgtttcttatatataggaccggagagagtatat 27488498  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 13789767 - 13789730
Alignment:
Q  300 agtaaactgtttcttataaataggaccggagagagtat 337  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  13789767 agtaaaatgtttcttataaataggaccggagggagtat 13789730  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 338
Target Start/End: Complemental strand, 44682592 - 44682563
Alignment:
Q  309 tttcttataaataggaccggagagagtata 338  Q
    ||||||||||||||||||||||||||||||    
T  44682592 tttcttataaataggaccggagagagtata 44682563  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 53441942 - 53441905
Alignment:
Q  300 agtaaactgtttcttataaataggaccggagagagtat 337  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  53441942 agtaaaatgtttcttataaataggaccggagggagtat 53441905  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 12747819 - 12747847
Alignment:
Q  309 tttcttataaataggaccggagagagtat 337  Q
    |||||||||||||||||||||||||||||    
T  12747819 tttcttataaataggaccggagagagtat 12747847  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 5109394 - 5109361
Alignment:
Q  304 aactgtttcttataaataggaccggagagagtat 337  Q
    |||| |||||||||||||||||||||||||||||    
T  5109394 aactttttcttataaataggaccggagagagtat 5109361  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 40430779 - 40430816
Alignment:
Q  300 agtaaactgtttcttataaataggaccggagagagtat 337  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  40430779 agtaaattgtctcttataaataggaccggagagagtat 40430816  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 45571142 - 45571183
Alignment:
Q  300 agtaaactgtttcttataaataggaccggagagagtatatgc 341  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45571142 agtaaattgtttcttatatataggaccggagggagtatatgc 45571183  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 45574809 - 45574850
Alignment:
Q  300 agtaaactgtttcttataaataggaccggagagagtatatgc 341  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45574809 agtaaattgtttcttatatataggaccggagggagtatatgc 45574850  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 45578476 - 45578517
Alignment:
Q  300 agtaaactgtttcttataaataggaccggagagagtatatgc 341  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45578476 agtaaattgtttcttatatataggaccggagggagtatatgc 45578517  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 45582143 - 45582184
Alignment:
Q  300 agtaaactgtttcttataaataggaccggagagagtatatgc 341  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45582143 agtaaattgtttcttatatataggaccggagggagtatatgc 45582184  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 45585810 - 45585851
Alignment:
Q  300 agtaaactgtttcttataaataggaccggagagagtatatgc 341  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45585810 agtaaattgtttcttatatataggaccggagggagtatatgc 45585851  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 45589477 - 45589518
Alignment:
Q  300 agtaaactgtttcttataaataggaccggagagagtatatgc 341  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45589477 agtaaattgtttcttatatataggaccggagggagtatatgc 45589518  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 45593144 - 45593185
Alignment:
Q  300 agtaaactgtttcttataaataggaccggagagagtatatgc 341  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45593144 agtaaattgtttcttatatataggaccggagggagtatatgc 45593185  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 45596811 - 45596852
Alignment:
Q  300 agtaaactgtttcttataaataggaccggagagagtatatgc 341  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45596811 agtaaattgtttcttatatataggaccggagggagtatatgc 45596852  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 45600478 - 45600519
Alignment:
Q  300 agtaaactgtttcttataaataggaccggagagagtatatgc 341  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45600478 agtaaattgtttcttatatataggaccggagggagtatatgc 45600519  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 45604145 - 45604186
Alignment:
Q  300 agtaaactgtttcttataaataggaccggagagagtatatgc 341  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45604145 agtaaattgtttcttatatataggaccggagggagtatatgc 45604186  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 45607812 - 45607853
Alignment:
Q  300 agtaaactgtttcttataaataggaccggagagagtatatgc 341  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45607812 agtaaattgtttcttatatataggaccggagggagtatatgc 45607853  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 45611479 - 45611520
Alignment:
Q  300 agtaaactgtttcttataaataggaccggagagagtatatgc 341  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45611479 agtaaattgtttcttatatataggaccggagggagtatatgc 45611520  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 45615146 - 45615187
Alignment:
Q  300 agtaaactgtttcttataaataggaccggagagagtatatgc 341  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45615146 agtaaattgtttcttatatataggaccggagggagtatatgc 45615187  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 11794563 - 11794599
Alignment:
Q  301 gtaaactgtttcttataaataggaccggagagagtat 337  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  11794563 gtaaaatgtttcttataaataggaccggagggagtat 11794599  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 8793841 - 8793869
Alignment:
Q  309 tttcttataaataggaccggagagagtat 337  Q
    |||||||||||||||||||||||||||||    
T  8793841 tttcttataaataggaccggagagagtat 8793869  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 17236891 - 17236919
Alignment:
Q  309 tttcttataaataggaccggagagagtat 337  Q
    |||||||||||||||||||||||||||||    
T  17236891 tttcttataaataggaccggagagagtat 17236919  T

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