View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2499_low_15 (Length: 375)
Name: NF2499_low_15
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 4327634 - 4327285
Alignment:
| Q |
16 |
tctaaaagcagtataacagttgtgattgaaatcttcatttaaatcaaattgatgatattttgattcaaaattaggccgcctatccgagttgttagagtat |
115 |
Q |
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| T |
4327634 |
tctaaaagcagtataacagttgtgattgaaatcttcatttaaatcaaattgatgatattttgattcaaaattaggccgcctatccgagtttttagttgat |
4327535 |
T |
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| Q |
116 |
ttactgggagctcctaagatggagtgtatgtactcatccattaatagggaatcatgttgatgttggctctggtttacatttaaaccaagaaactcattac |
215 |
Q |
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| T |
4327534 |
ttactggtagctcctaagatggagtgtatttactcatccattaatagggaatcatgttgatgttggctctggtttacatttaaaccaagaaactcattac |
4327435 |
T |
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| Q |
216 |
aatcacatgtgagctcaaaatattgacaagcattgaaataatgattaaaactatgatgcataacataagaacaacttgggctttgagttgttggtgagaa |
315 |
Q |
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| T |
4327434 |
aatcacatgtgagatcaaaatattgacaagcattgaaataatgattaaaactatgatgcataacataagaacaacttgggctttgagttgttggtgagaa |
4327335 |
T |
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| Q |
316 |
aattggtattaactaaggaaagactgaaccatcaaatccttgctcttcat |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4327334 |
aattggtattaactaaggaaagactgaaccatcaaatccttgctcttcat |
4327285 |
T |
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