View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2499_low_18 (Length: 349)
Name: NF2499_low_18
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 32148984 - 32148653
Alignment:
| Q |
1 |
aagggtgtcttagtcacta-tccgtgaattacttacctataaaaaattgtagtacttcaagtttgaccaagaatttaatgttgtgtgcagataataataa |
99 |
Q |
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| T |
32148984 |
aagggtgtcttagtcactaatccatgaattacttgcctataaaaaattgtagtacatcaagtttgaccaagaatttaatattgtgtgcagataataat-- |
32148887 |
T |
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| Q |
100 |
tatactaataatggcaacatcgtgttaaatacaaagaaacgtgacaatcatatttgacgttttttatttaacatctcaaatggcaactctatcaatatcc |
199 |
Q |
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| T |
32148886 |
-----taataatggcaacatcgtgttaaatacaaagaaacgtgacaatcatatttgacgttttttatttaacatctcaaatggcaactctatcaatatcc |
32148792 |
T |
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| Q |
200 |
catgcaatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaattt |
299 |
Q |
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| T |
32148791 |
catgcaatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaattt |
32148692 |
T |
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| Q |
300 |
ccaacacttcattacaatccttctcctatttttcttcat |
338 |
Q |
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| T |
32148691 |
ccaacacttcattacaaccctcctcctatttttcttcat |
32148653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 205 - 338
Target Start/End: Complemental strand, 32139387 - 32139263
Alignment:
| Q |
205 |
aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac |
304 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||| ||| || || ||||| ||| |||||||||||| | |||||| |||| |
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| T |
32139387 |
aatataaatagacctgcctcaacaccatcttcacaaactcaatatcatttac---------atctttacactctagccatggctaattccaattttcaac |
32139297 |
T |
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| Q |
305 |
acttcattacaatccttctcctatttttcttcat |
338 |
Q |
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| T |
32139296 |
acttcattacaatccttctcctatttttcttcat |
32139263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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