View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2499_low_20 (Length: 297)
Name: NF2499_low_20
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 32316599 - 32316864
Alignment:
| Q |
17 |
atgaagcacctaaaaatattagtgatgcatgtattggtttcttaaaagatcatttgacaagtactcaatcaagacaagcttcgaatttattaatgaaact |
116 |
Q |
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| T |
32316599 |
atgaagcacctaaaaatattagtgatgcatgtattggtttcttaaaagatcatttgacaagtactcaatcaagacaagcttcgaatttattaatgaaact |
32316698 |
T |
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| Q |
117 |
tctgggctcgaatttgcaagaacaatggatgcgttctgtgaaccttgcaattactaattgggttggtgagattgaagaacagcatcaaaacatgtttaga |
216 |
Q |
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| T |
32316699 |
tctgggctcgaatttgcaagaacaatggatgcgttctgtgaaccttgcaattactaattgggttggtgagattgaagaacagcatcaaaacatgtttaga |
32316798 |
T |
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| Q |
217 |
acgccatgttctttgttttcttatgcattttcaacaagtgggttgtggaaagtgcaactttattgt |
282 |
Q |
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| T |
32316799 |
acgccatgttctttgttttcttatgcattttcaacaagtgggttgtggaaagtgcaactttattgt |
32316864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 36041648 - 36041710
Alignment:
| Q |
207 |
catgtttagaacgccatgttctttgttttcttatgcattttcaacaagtgggttgtggaaagt |
269 |
Q |
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| T |
36041648 |
catgtttagaacaccatctcctttattttctcatgcattttcaacatttgggttgtggaaagt |
36041710 |
T |
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