View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2499_low_22 (Length: 280)
Name: NF2499_low_22
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 36323539 - 36323795
Alignment:
| Q |
14 |
tctctgcttgttggcctttggtagtgcaggcttgaaagcttctctgccagcacatggtgctgaccagtttgatgaaaaagatcccaaagaagcaagacaa |
113 |
Q |
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| T |
36323539 |
tctctacttgttggcctttggtagtgcaggcttgaaagcttctctgccagcacatggtgctgaccagtttgatgaaaaagatcccaaagaaacaagacaa |
36323638 |
T |
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| Q |
114 |
atgtccagcttctttaatggtctcttgcttgcaatttgcgttggtggttctgtcagcttaacttttaatgtatggatacaagacaacaaaggatgggatt |
213 |
Q |
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| T |
36323639 |
atgtccagcttctttaatggtctcttgcttgcaatttgcgttggtggttctgtcagcttaacttttaatgtatggatacaagacaacaaaggatgggatt |
36323738 |
T |
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| Q |
214 |
tgggtttgggaatctccaccattgctattgtctttgctatgatcacctttgcctttg |
270 |
Q |
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| T |
36323739 |
tgggtttgggaatctccaccattgctattgtctttgctatgatcacctttgcctttg |
36323795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 36330391 - 36330637
Alignment:
| Q |
20 |
cttgttggcctttggtagtgcaggcttgaaagcttctctgccagcacatggtgctgaccagtttgatgaaaaagatcccaaagaagcaagacaaatgtcc |
119 |
Q |
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| T |
36330391 |
cttgttggcctttggtagtgcaggcttgaaagcttctctgccagcacatggtgctgaccagtttgatgaaaaagatcccaaagaaacaagacaaatgtct |
36330490 |
T |
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| Q |
120 |
agcttctttaatggtctcttgcttgcaatttgcgttggtggttctgtcagcttaacttttaatgtatggatacaagacaacaaaggatgggatttgggtt |
219 |
Q |
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| T |
36330491 |
agcttctttaatgctctcttgcttgctgtttgcattggtggttctgtcagcttaacatttaatgtatggatacaaaacagcaaaggatgggattggggat |
36330590 |
T |
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| Q |
220 |
tgggaatctccaccattgctattgtctttgctatgatcacctttgcc |
266 |
Q |
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| T |
36330591 |
ttggaatatccaccattgctattgtctttgctatgatcatctttgcc |
36330637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 37919895 - 37920086
Alignment:
| Q |
22 |
tgttggcctttggtagtgcaggcttgaaagcttctctgccagcacatggtgctgaccagtttgatgaaaaagatcccaaagaagcaagacaaatgtccag |
121 |
Q |
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| T |
37919895 |
tgttggcctttggtagtgcaggcttgaaagcttctctgccagcacatggtgctgaccagtttgatgaaaaagatctcaaagaaacaagacaaatgtctag |
37919994 |
T |
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| Q |
122 |
cttctttaatggtctcttgcttgcaatttgcgttggtggttctgtcagcttaacttttaatgtatggatacaagacaacaaaggatgggatt |
213 |
Q |
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| T |
37919995 |
cttatttaatgttctcttacttgttgtttgcattgatggttctgtcaacttaacatttaatgtatagatacaaaacagcaaagggtgggatt |
37920086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 5458811 - 5459004
Alignment:
| Q |
20 |
cttgttggcctttggtagtgcaggcttgaaagcttctctgccagcacatggtgctgaccagtttgatgaaaaagatcccaaagaagcaagacaaatgtcc |
119 |
Q |
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|||||||||||| || |||||||| |||||| | ||||| |||||||||| ||||| ||||||||| |||||||||||||| || |||||||| |
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| T |
5458811 |
cttgttggccttcggcagtgcaggaaccaaagctgcattgccatcacatggtgcagaccaatttgatgaatcagatcccaaagaagaaaagaaaatgtcc |
5458910 |
T |
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| Q |
120 |
agcttctttaatggtctcttgcttgcaatttgcgttggtggttctgtcagcttaacttttaatgtatggatacaagacaacaaaggatgggatt |
213 |
Q |
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| T |
5458911 |
acattctttaatgttctcttgcttgctgtttgcatgggtggtgcagtcagcttaactttcattgtatggatacaaatcaacaaaggatgggatt |
5459004 |
T |
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