View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2499_low_25 (Length: 273)

Name: NF2499_low_25

Description: NF2499

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2499_low_25

[»] chr8 (2 HSPs)

[»] chr3 (1 HSPs)

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 58; E-Value: 2e-24

Query Start/End: Original strand, 18 - 107

Target Start/End: Complemental strand, 23349527 - 23349438

Alignment:

Q	18	attctagtaagtttattataatatacacatttgatatgattttctctatagatcatattagaaacatgttcaccaccttcttcactcaat	107	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|
T	23349527	attctagtaattttattataatatacacgtttgatataattttttctatagatcaaattagaaacatgtccaccatcttcatcactcaat	23349438	T

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Target: chr8; HSP #2

Raw Score: 38; E-Value: 0.000000000002

Query Start/End: Original strand, 144 - 189

Target Start/End: Complemental strand, 23349322 - 23349277

Alignment:

Q	144	ttacaaataagaaaacttcaaattctacattatgatcttcatgtat	189	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	23349322	ttacaaagaagaaaatttcaaattctacattatgatcttcatgtat	23349277	T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 38; E-Value: 0.000000000002

Query Start/End: Original strand, 148 - 240

Target Start/End: Original strand, 36633332 - 36633425

Alignment:

Q	148	aaataagaaaacttcaaa-ttctacattatgatcttcatgtatgtttatcttcatgcaatcaatttggtccatcaaaagaatgaatcactaaat	240	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	36633332	aaataagaaagcttcaaaattctacattatggtcttggtgtatctttatctttgtgcaatcagaatggtccatcaagagaatgaatcaataaat	36633425	T

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