View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2499_low_28 (Length: 250)
Name: NF2499_low_28
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 15233481 - 15233722
Alignment:
| Q |
1 |
tctatatttatttgttaacttaaagaacatcaatcaatttaattcattgatcaaaatattattcataacatattgtagctcataggaatgtaaaatggtg |
100 |
Q |
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| T |
15233481 |
tctatatttatttgttaacttaaagaacatcaatcaatttaattcattgatcaaaatattattcataacatattgtagctcatagcaatgtaaaatggtg |
15233580 |
T |
|
| Q |
101 |
tcccttaagagattaatacaaagatttctgaacatccacttatgatattcataacatttttaaagttaaaaaattcgtttacacgtccctcatagtaatg |
200 |
Q |
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| T |
15233581 |
tcacttaagagattaatacaaggatttctgaacatctaattatgatattcataacatttttaaagttaaaaaattcgtttacacgtccctcataggaatg |
15233680 |
T |
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| Q |
201 |
gattttgacaaacatattgtagctcgtttgttaccctatgat |
242 |
Q |
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| T |
15233681 |
gattttgacaaacatattgtagctcgtttgttaccctatgat |
15233722 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 14188354 - 14188288
Alignment:
| Q |
90 |
gtaaaatggtgtcccttaagagattaatacaaagatttctgaacatccacttatgatattcataaca |
156 |
Q |
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| T |
14188354 |
gtaatatgttgtcacttaacagataaatacaagggtttctggacatccacttattatattcataaca |
14188288 |
T |
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