View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2499_low_3 (Length: 540)
Name: NF2499_low_3
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_low_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 252 - 540
Target Start/End: Original strand, 29676149 - 29676437
Alignment:
| Q |
252 |
gcatactccctcccttgaaaacacagttggcaccaatttattccctccctcgtcttgctaaaaagaaactattcgctcatcaaattcgttttccctgaaa |
351 |
Q |
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| T |
29676149 |
gcatactccctcccttgaaaacacagttggcaccaatttattccctccctcgtcttgctaaaaagaaactgttcgctcatcaaattcgttttccctgaaa |
29676248 |
T |
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| Q |
352 |
atcatttcaatccattttctgagagttcttgctgaatttcactccattcttcgaagaccagcgaggtaattatgaaacttcaaaattcttaatagttttt |
451 |
Q |
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| T |
29676249 |
atcatttcaatccattttctgagagttcttgctgaatttcactccattcttcgaagaccagcgaggtaattatgaaacttcaaaattcttaatagttttt |
29676348 |
T |
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| Q |
452 |
ccctttgcctttataattgctcattttcttttcttgaattcttgttctagaaaagatgaagaaactaaggcactgtgaggaagaaaaca |
540 |
Q |
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| T |
29676349 |
ccctttgcctttataattgctcattttcttttcttgaattcttgttctagaaaagatgaagaaactaaggcactgtgaggaagaaaaca |
29676437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 29675909 - 29675983
Alignment:
| Q |
13 |
aatatgcttttgtcaagaattggtccattagtaataatgtaatggtagcaagtgacatcctccaccatatgaaat |
87 |
Q |
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| T |
29675909 |
aatatgcttttgtcaagaattggtccattagtaataatgtaatggtagcaaatgacatcctccaccatatgaaat |
29675983 |
T |
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