View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2499_low_30 (Length: 243)
Name: NF2499_low_30
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 3084080 - 3084302
Alignment:
| Q |
15 |
atattaaacagaaagatcaaattcaaggcctgttgcacatggagttctattcaaggatgcgcgagggacagaacacagagcatacttgagtcatgggact |
114 |
Q |
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| T |
3084080 |
atattaaacagaaagatcaaattcaaggcctgttgcacatggagttctatacaaggatgcacgagggacagaacacagggcatacttgaatcatgggact |
3084179 |
T |
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| Q |
115 |
aagaatgagatcatagtatcagctggtgcactaggtagcccacaacttctgatgttgagtggaattggagcagcacatcaccttagggaacacaacatca |
214 |
Q |
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| T |
3084180 |
aagaatgagatcatagtatcagctggtgcactaggtagcccacaacttctgatgttgagtggaattggagcaggacatcaccttagggaacacaacatca |
3084279 |
T |
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| Q |
215 |
gtgtagtgttagatcaacctttg |
237 |
Q |
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| T |
3084280 |
gtgtagtgttagatcaacctttg |
3084302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 47 - 233
Target Start/End: Original strand, 3092992 - 3093178
Alignment:
| Q |
47 |
ttgcacatggagttctattcaaggatgcgcgagggacagaacacagagcatacttgagtcatgggactaagaatgagatcatagtatcagctggtgcact |
146 |
Q |
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| T |
3092992 |
ttgcacatggagttctatacaaggatgcacgagggacagaacacagggcatacttgaatcatgggactaagaatgagatcatagtatcagctggtgcact |
3093091 |
T |
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| Q |
147 |
aggtagcccacaacttctgatgttgagtggaattggagcagcacatcaccttagggaacacaacatcagtgtagtgttagatcaacc |
233 |
Q |
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| T |
3093092 |
aggtagcccacaacttctgatgttgagtggaattggagcagcacatcaccttaagcaacataacatcagtgtagtgttacatcaacc |
3093178 |
T |
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