View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2499_low_33 (Length: 237)
Name: NF2499_low_33
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 26074210 - 26074408
Alignment:
| Q |
1 |
cgtttttatatgaagtgtcggtgttacatggttaatcaggtagccataatttttctttggagggaaaagtcttttcaattcaagttaattttcatttttt |
100 |
Q |
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| T |
26074210 |
cgttttcatatgaagtgtcggtgttacatggttaatcaggtagccataatttttctttggaaggaaaagtctttttaattcaagttaatttttatttttt |
26074309 |
T |
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| Q |
101 |
aactgatttgttagttgatgaaattacataccccaatactgtattggtgattaacaagtgtggcatttgtaggaaggtagtttctgtctaaggatttca |
199 |
Q |
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| T |
26074310 |
aactgatttgttagttgatgaaaatacataccccaatactgtattggtgattaacaagtgtggcatttgtaggaaggtagtttctgtctaaggatttca |
26074408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 26093853 - 26094071
Alignment:
| Q |
2 |
gtttttatatgaagtgtcggtgttacatggttaatcaggtagccataatttttctttggagggaaaagtcttttcaattcaagttaattttcatttttta |
101 |
Q |
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|||||||||| ||||||||||||||||| ||||||||| || || ||||||||||| || |||||||||||||||||||||||||||||| ||||| || |
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| T |
26093853 |
gtttttatataaagtgtcggtgttacatagttaatcagataagcacaatttttctttagaaggaaaagtcttttcaattcaagttaatttttatttt-ta |
26093951 |
T |
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| Q |
102 |
actgatttgttagttgatgaaattacataccccaatactgtattggtgattaacaagtgtggcatttgtaggaaggtagtttctgtctaaggatttcaat |
201 |
Q |
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| T |
26093952 |
actgatttgttagttgatgaaaatacataccccaatactgtattggtggttaacaagtgtggcatttgtaggaaggtagtttctgtctaaggatttcaat |
26094051 |
T |
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| Q |
202 |
acattgttcacaacaatatt |
221 |
Q |
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| T |
26094052 |
acattgttcacaacaatatt |
26094071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 26105377 - 26105483
Alignment:
| Q |
96 |
tttttaactgatttgt-tagttgatgaaattacataccccaatactgtattggtgattaacaagtgtggcatttgtaggaaggtagtttctgtctaagga |
194 |
Q |
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||||||| ||||||| ||||||||||| ||||||||||||| || |||||| ||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
26105377 |
tttttaagagatttgtatagttgatgaacatacataccccaatgttgaattggttgttaacaagtgtagcatttgtgggaaggtagtttctgtctaagga |
26105476 |
T |
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| Q |
195 |
tttcaat |
201 |
Q |
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||||||| |
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| T |
26105477 |
tttcaat |
26105483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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