View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2499_low_34 (Length: 236)

Name: NF2499_low_34
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2499_low_34
NF2499_low_34
[»] chr7 (4 HSPs)
chr7 (18-175)||(3928631-3928788)
chr7 (18-172)||(3929983-3930137)
chr7 (18-164)||(21317534-21317680)
chr7 (167-222)||(3928818-3928873)
[»] scaffold0197 (1 HSPs)
scaffold0197 (18-164)||(30971-31117)
[»] chr8 (5 HSPs)
chr8 (22-172)||(43479700-43479850)
chr8 (22-164)||(38799455-38799597)
chr8 (22-164)||(38821920-38822062)
chr8 (22-164)||(41943904-41944046)
chr8 (19-80)||(26592212-26592273)
[»] chr2 (3 HSPs)
chr2 (18-172)||(13576300-13576454)
chr2 (22-74)||(34562678-34562730)
chr2 (22-74)||(34571472-34571524)
[»] chr5 (7 HSPs)
chr5 (19-164)||(12531452-12531597)
chr5 (19-164)||(12547022-12547167)
chr5 (18-111)||(9866679-9866772)
chr5 (22-140)||(38735501-38735619)
chr5 (18-113)||(9894654-9894749)
chr5 (18-87)||(9870018-9870087)
chr5 (19-47)||(12538675-12538703)
[»] chr4 (2 HSPs)
chr4 (22-164)||(24860506-24860648)
chr4 (28-140)||(53290720-53290832)


Alignment Details
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 3928631 - 3928788
Alignment:
Q  18 aatagtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctg 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||    
T  3928631 aatagtaactctcttagcatgaatagcacaaagattcatatcttcaaacaaaccaacaatacacgcttcagcgatttcttgaagagcagaaacagcgctg 3928730  T
Q  118 atctggaatcagagatcagttttgaaatcgtgagcgatttcatgaaccaatcttttga 175  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  3928731 atctggaatcggagatcagttttgaaatcctgagcgatttcatgaaccaatcttttga 3928788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 3929983 - 3930137
Alignment:
Q  18 aatagtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctg 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   |||||||| |||||||||||| ||     
T  3929983 aatagtaactctcttagcatgaatggcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcagcttcttgaagagcagaaacagcacta 3930082  T
Q  118 atctggaatcagagatcagttttgaaatcgtgagcgatttcatgaaccaatcttt 172  Q
     |||| ||||  ||||||||||||||||| |||||||||||| ||||||||||||    
T  3930083 ctctgaaatcgaagatcagttttgaaatcctgagcgatttcacgaaccaatcttt 3930137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 21317680 - 21317534
Alignment:
Q  18 aatagtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctg 117  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||   |||||||| |||||||||||| |||    
T  21317680 aatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagccgcttcttgaagagcagaaacagcactg 21317581  T
Q  118 atctggaatcagagatcagttttgaaatcgtgagcgatttcatgaac 164  Q
     ||||||||| |||||| ||||||||||| |||||||||||| ||||    
T  21317580 ctctggaatctgagatcggttttgaaatcctgagcgatttcacgaac 21317534  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 3928818 - 3928873
Alignment:
Q  167 atcttttgatactttctgatttcacgcaatgtgactgttcctggtctgaatctgtg 222  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  3928818 atcttttgatacttcctgatttcacgcaatgcgactgttcctggtctgaatctgtg 3928873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 31117 - 30971
Alignment:
Q  18 aatagtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctg 117  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||   |||||||| |||||||||||| |||    
T  31117 aatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactg 31018  T
Q  118 atctggaatcagagatcagttttgaaatcgtgagcgatttcatgaac 164  Q
     ||||||||| |||||  ||||||||||| |||||||||||| ||||    
T  31017 ctctggaatctgagataggttttgaaatcctgagcgatttcacgaac 30971  T

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Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 43479700 - 43479850
Alignment:
Q  22 gtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctgatct 121  Q
    ||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||||||||  |||||||| |||||||||||||||  |||    
T  43479700 gtaaccctcttagcatgaatagcgcaaaggttagtatcttcaaacaaaccaacaagataagcttcagcggcttcttgaagagcagaaacagcgctactct 43479799  T
Q  122 ggaatcagagatcagttttgaaatcgtgagcgatttcatgaaccaatcttt 172  Q
    |||| | |||||||||||||||||| |||||||||||   |||||||||||    
T  43479800 ggaacctgagatcagttttgaaatcctgagcgatttccctaaccaatcttt 43479850  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 38799597 - 38799455
Alignment:
Q  22 gtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctgatct 121  Q
    |||||||||||||||||||| |||||||| || || |||||||| | |||||| |  || ||||||||   |||||||| ||| ||||| |||||| |||    
T  38799597 gtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctct 38799498  T
Q  122 ggaatcagagatcagttttgaaatcgtgagcgatttcatgaac 164  Q
    ||||||  ||||| || |||||||| ||||| |||||| ||||    
T  38799497 ggaatctcagatctgtcttgaaatcttgagcaatttcacgaac 38799455  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 38821920 - 38822062
Alignment:
Q  22 gtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctgatct 121  Q
    |||||||||||||||||||| |||||||| || || |||||||| | |||||| |  || ||||||||   |||||||| ||| ||||| |||||| |||    
T  38821920 gtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctct 38822019  T
Q  122 ggaatcagagatcagttttgaaatcgtgagcgatttcatgaac 164  Q
    ||||||  ||||| || |||||||| ||||| |||||| ||||    
T  38822020 ggaatctcagatctgtcttgaaatcttgagcaatttcacgaac 38822062  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 41944046 - 41943904
Alignment:
Q  22 gtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctgatct 121  Q
    ||||| |||||||||||||| ||||| | ||| ||||| |||||||| ||||| ||||| ||||| ||   ||| ||||  |||  ||||||   | |||    
T  41944046 gtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaatccaaccagataagcttctgctgcttcctgaagtgcaagaacagcatggctct 41943947  T
Q  122 ggaatcagagatcagttttgaaatcgtgagcgatttcatgaac 164  Q
    |||||| |||||| || |||||||| ||||| |||||| ||||    
T  41943946 ggaatctgagatccgtcttgaaatcttgagcaatttcacgaac 41943904  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 26592273 - 26592212
Alignment:
Q  19 atagtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagata 80  Q
    |||||||| | ||||||||||||||| || || || ||||| |||||||| |||||||||||    
T  26592273 atagtaacacgcttagcatgaatagcgcagaggttagtatcctcaaacaatccaacaagata 26592212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 13576454 - 13576300
Alignment:
Q  18 aatagtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctg 117  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||   |||||||| |||||||||||| |||    
T  13576454 aatagtaaccctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactg 13576355  T
Q  118 atctggaatcagagatcagttttgaaatcgtgagcgatttcatgaaccaatcttt 172  Q
     | || || | |||||| ||||||||||| ||||| |||||  ||||||||||||    
T  13576354 ctttgaaaacggagatccgttttgaaatcctgagcaatttctcgaaccaatcttt 13576300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 34562678 - 34562730
Alignment:
Q  22 gtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaac 74  Q
    ||||| |||||||||||||| ||||| | ||| ||||| ||||||||||||||    
T  34562678 gtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaac 34562730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 34571472 - 34571524
Alignment:
Q  22 gtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaac 74  Q
    ||||| |||||||||||||| ||||| | ||| ||||| ||||||||||||||    
T  34571472 gtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaac 34571524  T

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Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 12531597 - 12531452
Alignment:
Q  19 atagtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctga 118  Q
    |||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||   |||||||| |||||||||||| |||     
T  12531597 atagtaaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgc 12531498  T
Q  119 tctggaatcagagatcagttttgaaatcgtgagcgatttcatgaac 164  Q
    | ||||||| |||||| ||||||||||| |||||||||||| ||||    
T  12531497 tttggaatcggagatctgttttgaaatcttgagcgatttcacgaac 12531452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 12547022 - 12547167
Alignment:
Q  19 atagtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctga 118  Q
    |||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||   |||||||| |||||||||||| |||     
T  12547022 atagtaaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgc 12547121  T
Q  119 tctggaatcagagatcagttttgaaatcgtgagcgatttcatgaac 164  Q
    | ||||||| |||||| ||||||||||| |||||||||||| ||||    
T  12547122 tttggaatcggagatctgttttgaaatcttgagcgatttcacgaac 12547167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 9866679 - 9866772
Alignment:
Q  18 aatagtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaaca 111  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||  ||| |||   |||||||| ||||||||||    
T  9866679 aatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaacaagatagtctttagcagcttcttgaagagcagaaaca 9866772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 38735619 - 38735501
Alignment:
Q  22 gtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctgatct 121  Q
    ||||| |||||||||||||||| |||||| || ||||||||||||||||||||||||||  |||||  || || ||||| ||||||||||||| || | |    
T  38735619 gtaaccctcttagcatgaatagtacaaaggttagtatcttcaaacaaaccaacaagataaacttcaatgactttttgaagagcagaaacagcgttgctat 38735520  T
Q  122 ggaatcagagatcagtttt 140  Q
    |||| | |||||| |||||    
T  38735519 ggaacctgagatctgtttt 38735501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 9894749 - 9894654
Alignment:
Q  18 aatagtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagc 113  Q
    ||||||||||| ||||||||||||||| |||| ||| |||||||||||||||| ||||| | | |||||| | | |||||||| ||||||||||||    
T  9894749 aatagtaactcacttagcatgaatagcgcaaatattagtatcttcaaacaaactaacaaaacaagcttcaacaacttcttgaacagcagaaacagc 9894654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 9870087 - 9870018
Alignment:
Q  18 aatagtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttca 87  Q
    ||||||||||||||||||||||||||| ||||||||  |||||| |||||||||||||| ||| ||||||    
T  9870087 aatagtaactctcttagcatgaatagcgcaaagattaatatcttaaaacaaaccaacaaaataagcttca 9870018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 12538703 - 12538675
Alignment:
Q  19 atagtaactctcttagcatgaatagcaca 47  Q
    |||||||||||||||||||||||||||||    
T  12538703 atagtaactctcttagcatgaatagcaca 12538675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 24860648 - 24860506
Alignment:
Q  22 gtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctgatct 121  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |  ||||| ||||| ||||||||   |||||||| |||||||||||||||  |||    
T  24860648 gtaactctcttagcatgaatagcgcaaagatttgtatcttcaaagagtccaacgagataagcttcagcagcttcttgaagagcagaaacagcgctactct 24860549  T
Q  122 ggaatcagagatcagttttgaaatcgtgagcgatttcatgaac 164  Q
    |||| | |||||| ||||||||||| |||||||||||| ||||    
T  24860548 ggaaacggagatcggttttgaaatcttgagcgatttcacgaac 24860506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 53290832 - 53290720
Alignment:
Q  28 ctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctgatctggaatc 127  Q
    |||||||||||||| | |||||| || |||||||||||||||||||||||||| |||||| ||| || ||||| |||||||||| || || | ||||| |    
T  53290832 ctcttagcatgaatggtacaaaggttagtatcttcaaacaaaccaacaagataagcttcaacgactttttgaagagcagaaacaacgttgctatggaacc 53290733  T
Q  128 agagatcagtttt 140  Q
     |||||| |||||    
T  53290732 tgagatctgtttt 53290720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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