View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2499_low_4 (Length: 522)
Name: NF2499_low_4
Description: NF2499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2499_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 17 - 514
Target Start/End: Original strand, 43483433 - 43483930
Alignment:
| Q |
17 |
acaaacattatcactaactaatatgcatgaaacagttagggaacaatattatatcaatatattagattaataggaagcagataatgatgataggaaaact |
116 |
Q |
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| T |
43483433 |
acaaacattatcactaactaatatgcatggaacagttagggaacaatattatatcaatatattagattaataggaagcagataatgatgataggaaaact |
43483532 |
T |
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| Q |
117 |
aagatggctcaaatacacgtatatatacattataggttgacattaattcatatatagcgatcatataannnnnnnattatcatttcagaaaaatataaat |
216 |
Q |
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| T |
43483533 |
aagatggctcaaatacacgtatatatacattataggttgacattaattcatatatagcgatcatataatttttttattatcatttcagaaaaatataaat |
43483632 |
T |
|
| Q |
217 |
ggcaatcgatttcaaaccagacaaaaatgatgttgaccctgcatggaccattagggtcatatacaatttaccaccatgatctattaatatacggacccaa |
316 |
Q |
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| T |
43483633 |
ggcaatcgatttcaaaccagacaaaaatgatgttgaccctgcatggaccattagggtcatatacaatttaccaccatgatctattaatatacggacccaa |
43483732 |
T |
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| Q |
317 |
taattcatgacagttaacttaggtagctagaaactgccaaaatgtgtctatatataggacctaaattaacatatccatatggtatattcagaaaaagagc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43483733 |
taattcatgacagttaacttaggtagctagaaactgccaaaatgtgtctatatataggacctaaattaacatatccatatggtatattcagaaaaagagc |
43483832 |
T |
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| Q |
417 |
aaatcatatactacacaagtctaaattgcttttaacttttaagatggttgcttcacaaaacaaacgcattctacaagtgatttttgttctcctttgct |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43483833 |
aaatcatatactacacaagtctaaattgcttttaacttttaagatggttgcttcacaaaacaaacgcattctacaagtgatttttgttctcctttgct |
43483930 |
T |
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