View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2500_high_5 (Length: 330)
Name: NF2500_high_5
Description: NF2500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2500_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 24661762 - 24661439
Alignment:
| Q |
1 |
ttctcttgaagttttctttcttgatctttttatcacgatgattattagaaaatcagagagaaagagtagaaaaataagtgcactagctatagggataatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24661762 |
ttctcttgaagttttctttcttgatctttttatcacgatgattattagaaaaccagagagaaagagtagaaaaataagtgcactagctatagggataatc |
24661663 |
T |
|
| Q |
101 |
acctttaagctagggaannnnnnnnnnnngatagtgcatgcaggtaaatttaattctgaaacaccaccacaaagcttgatgtttccattgattgaaaagg |
200 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24661662 |
acctttaagctatggaatttttcttttttgatagtgcatgcaggtaaatttaattctggaacaccaccacaaagcttgatgtttccattgattgaaaagg |
24661563 |
T |
|
| Q |
201 |
aagttgcatttttgaagattccgttcatcggtaattctccatcctaattattgtaagaaagatttagatgcattagtcctttaatctcaccaagaaattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24661562 |
aagttgcatttttgaagattccgttcatcggtaattctccatccaaattattgtaagaaagatttagatgcattagtcctttaatctcaccaagaaattc |
24661463 |
T |
|
| Q |
301 |
aggaatcttgccagataagttatt |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
24661462 |
aggaatcttgccagataagttatt |
24661439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University