View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2500_high_9 (Length: 215)
Name: NF2500_high_9
Description: NF2500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2500_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 33 - 198
Target Start/End: Complemental strand, 41476696 - 41476531
Alignment:
| Q |
33 |
tcaaaccgactacaacaaatcattccaaaatgcaacagaatgttaagctataccgagaagatagatatattaataaaaaccagaatgttttggctctaaa |
132 |
Q |
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| T |
41476696 |
tcaaatcgactacaacaaatcattccaaaatgcagcagaatgttaagctataccgagaagaaagatatattaataaaaaccagaatgttttggctctaaa |
41476597 |
T |
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| Q |
133 |
tccatgaaacagaataccaatattaattagaacaattcactttaactatcaacataccctcattaa |
198 |
Q |
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| T |
41476596 |
tccatgaaacagaataccaatattaattagaacaattcactttaactatcaacataccctcattaa |
41476531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 47 - 192
Target Start/End: Complemental strand, 41483735 - 41483591
Alignment:
| Q |
47 |
acaaatcattccaaaatgcaacagaatgttaagctataccgagaagatagatatattaataaaaaccagaatgttttggctctaaatccatgaaacagaa |
146 |
Q |
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| T |
41483735 |
acaaatcattccaaaatgtaacagactgt-aagctacaccaaaatgatatatatagtagtaaaaaccagaatgtttcacctctaaatcaaagaaacagaa |
41483637 |
T |
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| Q |
147 |
taccaatattaattagaacaattcactttaactatcaacataccct |
192 |
Q |
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| T |
41483636 |
caccaatattaattagaaatattcagtttaactatcaacataccct |
41483591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 49 - 161
Target Start/End: Complemental strand, 41469655 - 41469544
Alignment:
| Q |
49 |
aaatcattccaaaatgcaacagaatgttaagctataccgagaagatagatatattaataaaaaccagaatgttttggctctaaatccatgaaacagaata |
148 |
Q |
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| T |
41469655 |
aaatcattaaaaaatgcaacagaatgt-aagctacaccgaaaggatatatataataataaaaaccagaatgtttcgcctctaaatcaatgaaacggaata |
41469557 |
T |
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| Q |
149 |
ccaatattaatta |
161 |
Q |
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| T |
41469556 |
ccaatatcaatta |
41469544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 51 - 192
Target Start/End: Complemental strand, 40750937 - 40750797
Alignment:
| Q |
51 |
atcattccaaaatgcaacagaatgttaagctataccgagaagatagatatattaataaaaaccagaatgttttggctctaaatccatgaaacagaatacc |
150 |
Q |
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||||||||||||||||| ||||||| |||||| ||| | | ||||| | || || ||||||| | | ||||| ||||||||| |||| || ||||||| |
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| T |
40750937 |
atcattccaaaatgcaatagaatgt-aagctacaccaaaatgataggtgtagtagtaaaaacgatagtgtttcacctctaaatcgatgagacggaatacc |
40750839 |
T |
|
| Q |
151 |
aatattaattagaacaattcactttaactatcaacataccct |
192 |
Q |
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| T |
40750838 |
gatattaattagaacaattcattttaactatcaacataccct |
40750797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 16409132 - 16409197
Alignment:
| Q |
104 |
aataaaaaccagaatgttttggctctaaatccatgaaacagaataccaatattaattagaacaatt |
169 |
Q |
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| T |
16409132 |
aataaaaacaagaatgtttcacctctaaatcaaagaaacagaatacaaatattaataagaacaatt |
16409197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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