View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2500_low_1 (Length: 808)
Name: NF2500_low_1
Description: NF2500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2500_low_1 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 738; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 16 - 808
Target Start/End: Original strand, 21483469 - 21484270
Alignment:
| Q |
16 |
caacattgaattgagaagcaccccatgaatgatttgattccaacatgtgatattcattagtaacagcaggttggtaagggttaatgttatttgaaacaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21483469 |
caacattgaattgagaagcaccccatgaatgatttgattccaacatgtgatattcattagtaacagcaggttggtaagggttaatgttatttgaaacaga |
21483568 |
T |
|
| Q |
116 |
accatttgtgtaaggatcagcaacaaatccaacgccaactccaaccattggttgtgaaaattgttgtggaggtacaatgagaggtgtttgatctagccat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21483569 |
accatttgtgtaaggatcagcaacaaatccaactccaactccaaccattggttgtgaaaattgttgtggaggtacaatgagaggtgtttgatctagccat |
21483668 |
T |
|
| Q |
216 |
gatgtttggttgaaacacgtgttcgattcaggtgcaaatgtgtttgctgtgttttggttctgacacggatcttgaaaatgttgttgttgaggaacaatat |
315 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21483669 |
gatgtttggttgaaacatgcgttcgattcaggtgcaaatgtgtttgctgtgttttggttctgacacggatcttgaaaatgatgttgttgaggaacaatat |
21483768 |
T |
|
| Q |
316 |
ttgaaggtattattgtgttcgtgttggcgttttctttgagtcttttgttgtgaagatgactagtttgaacccattcaagaatgagcttcaacaattgttt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21483769 |
ttgaaggtattattgtgttcgtgttggcgttttctttgagtcttttgttatgaagatgactagtttgaacccattcaagaatgagcttcaacaattgttt |
21483868 |
T |
|
| Q |
416 |
catcccttcttttccaccacctaatctcctagcagcactttcgatcgtcgatttcttaagcttcacattcctcaaatcattcgcggagacactgtctttg |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21483869 |
catcccttcttttccaccacctaatctcctagcagcactttcaatcgttgatttcttaagcttcacattcctcaaatcattcgcggagacactgtctttg |
21483968 |
T |
|
| Q |
516 |
ttcgatttaagccactccaagaaaaccatactcatttcatcacttacaccatcacatgcacctaattcatctccttgaatactctcttccccatttacac |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21483969 |
ttcgatttaagccactccaagaaaaccatactcatttcatcacttacaccatcacatgcacctaattcatctccttgaatactctcttccccatttacac |
21484068 |
T |
|
| Q |
616 |
cgtcacacacaaaaacatcgtcgttattctcctcgatattcacttgttgcggtttattttcccgatcatcatgcactatcatcggaac---------ttg |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21484069 |
cgtcacacacaaaaacatcgtcgttattctcctcgatattcacttgttgcggtttattttcccgatcatcatgcactatcatcggaacttgttgatgttg |
21484168 |
T |
|
| Q |
707 |
ttgatatccgtcttgcacttgaacttgttgctcttgtgtgaaatccactaaagggttttcatcttcattttgaaaaatcgaagcagggtcaaaaaattca |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21484169 |
ttgatatccgtcttgcacttgaacttgttgctcttgagtgaaatccactaaagggttttcatcttcattttgaaaaatcgaagcagggtcaaaaaattca |
21484268 |
T |
|
| Q |
807 |
tt |
808 |
Q |
| |
|
|| |
|
|
| T |
21484269 |
tt |
21484270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 636 - 711
Target Start/End: Original strand, 26551516 - 26551591
Alignment:
| Q |
636 |
tcgttattctcctcgatattcacttgttgcggtttattttcccgatcatcatgcactatcatcggaacttgttgat |
711 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||||||||||| ||||||||||||||||| | || |||||||| |
|
|
| T |
26551516 |
tcgttattttcctcaatattcacttgttgtggtttattttccctttcatcatgcactatcattgaaatttgttgat |
26551591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University