View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2500_low_3 (Length: 535)
Name: NF2500_low_3
Description: NF2500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2500_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 249 - 526
Target Start/End: Complemental strand, 50373323 - 50373046
Alignment:
| Q |
249 |
tggttaacgatgaatgtgtacgactggattttctattaaactatctattaggcgctagttagcaagcacacatagtattaggttggattgaagtgtttag |
348 |
Q |
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| T |
50373323 |
tggttaacgatgaatgtgtacgactggattttctattaaactatctattaggcgctagttggcaagcacacatagtattaggttggattgaagtgtttag |
50373224 |
T |
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| Q |
349 |
cttccactaactttctaaaatgtatagatgaccgtaaaaagtagaattagtgtgcagttaagctgttttctctcatcattctgcaaattggattgtggct |
448 |
Q |
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| T |
50373223 |
cttccactaactttctaaaatgtatagatgaccgtaaaaagtagaattagtgtgcagttaagctgttttctctcatcattctgcaaattggattgtggct |
50373124 |
T |
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| Q |
449 |
ctcatcattctcacgtttactttgtttctttggaacaagaggtttagctttgaaaatcaccaccccacaggttctgct |
526 |
Q |
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| T |
50373123 |
ctcatcattctaacgtttactttgtttctttggaacaagaggtttagctttgaaaatcaccaccccaggggttctgct |
50373046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 50373535 - 50373339
Alignment:
| Q |
17 |
aataggtttgttggagctagattgggaagtgaaaatatgtcgcacatattgtgaagctaactcctgtgcacatgcacatgcacatgcttaagcagctttg |
116 |
Q |
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| T |
50373535 |
aataggtttgttggagctagattgggaagtgaaaatatgtcgcacatattgtgaagctaactcctgtgcacatgc------------ttaagcagctttg |
50373448 |
T |
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| Q |
117 |
ggatatagtagtggttccaagctccagctcaaattagtcatttattttttgtggattctatagggactttatatctctgaactgttcgtttggaatcctc |
216 |
Q |
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| T |
50373447 |
ggatatagtagtggttccaagctccagctcaaattagtcatttattttttgtggattctatagggactttatatctctgaactgttcgtttggaatcctc |
50373348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 380
Target Start/End: Original strand, 48272529 - 48272567
Alignment:
| Q |
342 |
tgtttagcttccactaactttctaaaatgtatagatgac |
380 |
Q |
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| T |
48272529 |
tgtttagcttgcactaactttctaaaatgtatagatgac |
48272567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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